myRT

myRT report for GCA_000018765.1_ASM1876v1

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Seq: CP000891.1 Shewanella baltica OS195, complete genome (5347283 bp)
Overview 1 RT 1: 1057543-1065301 bp 2 RT 2: 1162836-1168281 bp 3 RT 3: 2969232-2977091 bp 4 RT 4: 3541131-3547450 bp 5 RT 5: 4114500-4120106 bp 6 RT 6: 4319473-4326300 bp 7 RT 7: 5025631-5029365 bp Neighborhood of RT #1 [1057543, 1065306] PRK10636 TIGR02443 RVT_N RVT-GII GIIM YhaK PRK11776 Neighborhood of RT #2 [1162836, 1168301] RVT_N RVT-GII GIIM RarD Lrp Neighborhood of RT #3 [2969232, 2977091] RVT_N RVT-GII GIIM AAA_15 TOPRIM_OLD Neighborhood of RT #4 [3541131, 3547467] TauE GSDH RVT_N RVT-GII GIIM InsE PHA02517 Neighborhood of RT #5 [4114500, 4120106] COG2932 RVT-UG5 nitrilase Neighborhood of RT #6 [4319473, 4326641] metK RVT_N RVT-GII GIIM CHAT Neighborhood of RT #7 [5025631, 5029388] PRK10358 RVT_N RVT-GII GIIM InsE PHA02517 Feature: gene Location: 1057543-1059456 bp Ori: ABX48076.1 Feature: domain Description: PRK10636 Location: 1057546-1059439 bp Feature: domain Description: PRK1 0636 Location: 1 057546-1 059439 bp Feature: gene Location: 1059710-1059913 bp Ori: ABX48077.1 Feature: domain Description: TIGR02443 Location: 1059725-1059893 bp Feature: domain Description: TIGR02443 Location: 1 059725-1 059893 bp Feature: gene Location: 1060285-1061757 bp Ori: ABX48078.1 Feature: domain Description: RVT_N Location: 1060333-1060576 bp Feature: domain Description: RVT_N Location: 1 060333-1 060576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1060621-1061248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 060621 -1 061 248 bp Feature: domain Description: GIIM Note: maturase Location: 1061308-1061533 bp Feature: domain Description: GIIM Note: maturase Location: 1 061 308-1 061 533 bp Feature: gene Location: 1062729-1063601 bp Ori: ABX48079.1 Feature: domain Description: YhaK Location: 1062753-1063587 bp Feature: domain Description: YhaK Location: 1 062753-1 063587 bp Feature: gene Location: 1063930-1065306 bp Ori: ABX48080.1 Feature: domain Description: PRK11776 Location: 1063936-1065301 bp Feature: domain Description: PRK1 1 776 Location: 1 063936-1 065301 bp Feature: gene Location: 1162836-1163078 bp Feature: gene Location: 1163283-1164455 bp Feature: gene Location: 1164715-1166187 bp Ori: ABX48157.1 Feature: domain Description: RVT_N Location: 1164763-1165006 bp Feature: domain Description: RVT_N Location: 1 1 64763-1 1 65006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1165051-1165678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 65051 -1 1 65678 bp Feature: domain Description: GIIM Note: maturase Location: 1165738-1165963 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 65738-1 1 65963 bp Feature: gene Location: 1166839-1167747 bp Ori: ABX48158.1 Feature: domain Description: RarD Location: 1166860-1167721 bp Feature: domain Description: RarD Location: 1 1 66860-1 1 67721 bp Feature: gene Location: 1167849-1168301 bp Ori: ABX48159.1 Feature: domain Description: Lrp Location: 1167852-1168281 bp Feature: domain Description: Lrp Location: 1 1 67852-1 1 68281 bp Feature: gene Location: 2969232-2971511 bp Feature: gene Location: 2971561-2971710 bp Feature: gene Location: 2971884-2973356 bp Ori: ABX49685.1 Feature: domain Description: RVT_N Location: 2971932-2972175 bp Feature: domain Description: RVT_N Location: 2971 932-29721 75 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2972220-2972847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2972220-2972847 bp Feature: domain Description: GIIM Note: maturase Location: 2972907-2973132 bp Feature: domain Description: GIIM Note: maturase Location: 2972907-29731 32 bp Feature: gene Location: 2974205-2976046 bp Ori: ABX49686.1 Feature: domain Description: AAA_15 Location: 2974214-2975342 bp Feature: domain Description: AAA_1 5 Location: 297421 4-2975342 bp Feature: domain Description: TOPRIM_OLD Location: 2975492-2975741 bp Feature: domain Description: TOPRIM_OLD Location: 2975492-2975741 bp Feature: gene Location: 2976189-2977091 bp Feature: gene Location: 3541131-3541889 bp Ori: ABX50149.1 Feature: domain Description: TauE Location: 3541149-3541872 bp Feature: domain Description: TauE Location: 3541 1 49-3541 872 bp Feature: gene Location: 3542111-3543313 bp Ori: ABX50150.1 Feature: domain Description: GSDH Location: 3542297-3543290 bp Feature: domain Description: GSDH Location: 3542297-3543290 bp Feature: gene Location: 3544586-3546058 bp Ori: ABX50151.1 Feature: domain Description: RVT_N Location: 3544634-3544877 bp Feature: domain Description: RVT_N Location: 3544634-3544877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3544922-3545549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3544922-3545549 bp Feature: domain Description: GIIM Note: maturase Location: 3545609-3545834 bp Feature: domain Description: GIIM Note: maturase Location: 3545609-3545834 bp Feature: gene Location: 3546308-3546598 bp Ori: ABX50152.1 Feature: domain Description: InsE Location: 3546329-3546590 bp Feature: domain Description: InsE Location: 3546329-3546590 bp Feature: gene Location: 3546658-3547467 bp Ori: ABX50153.1 Feature: domain Description: PHA02517 Location: 3546661-3547450 bp Feature: domain Description: PHA0251 7 Location: 3546661 -3547450 bp Feature: gene Location: 4114500-4115189 bp Ori: ABX50657.1 Feature: domain Description: COG2932 Location: 4114551-4115184 bp Feature: domain Description: COG2932 Location: 41 1 4551 -41 1 51 84 bp Feature: gene Location: 4115293-4115808 bp Feature: gene Location: 4115846-4118854 bp Ori: ABX50659.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4116389-4116869 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 41 1 6389-41 1 6869 bp Feature: domain Description: nitrilase Location: 4118090-4118780 bp Feature: domain Description: nitrilase Location: 41 1 8090-41 1 8780 bp Feature: gene Location: 4119256-4119618 bp Feature: gene Location: 4119759-4120106 bp Feature: gene Location: 4319473-4320624 bp Ori: ABX50822.1 Feature: domain Description: metK Location: 4319488-4320610 bp Feature: domain Description: metK Location: 431 9488-432061 0 bp Feature: gene Location: 4320885-4321007 bp Feature: gene Location: 4321179-4322651 bp Ori: ABX50824.1 Feature: domain Description: RVT_N Location: 4321227-4321470 bp Feature: domain Description: RVT_N Location: 4321 227-4321 470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4321515-4322142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4321 51 5-43221 42 bp Feature: domain Description: GIIM Note: maturase Location: 4322202-4322427 bp Feature: domain Description: GIIM Note: maturase Location: 4322202-4322427 bp Feature: gene Location: 4323462-4324340 bp Feature: gene Location: 4324485-4326641 bp Ori: ABX50826.1 Feature: domain Description: CHAT Location: 4326132-4326300 bp Feature: domain Description: CHAT Location: 43261 32-4326300 bp Feature: gene Location: 5025631-5026095 bp Ori: ABX51405.1 Feature: domain Description: PRK10358 Location: 5025634-5026093 bp Feature: domain Description: PRK1 0358 Location: 5025634-5026093 bp Feature: gene Location: 5026250-5026618 bp Feature: gene Location: 5026637-5028109 bp Ori: ABX51407.1 Feature: domain Description: RVT_N Location: 5026685-5026928 bp Feature: domain Description: RVT_N Location: 5026685-5026928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5026973-5027600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5026973-5027600 bp Feature: domain Description: GIIM Note: maturase Location: 5027660-5027885 bp Feature: domain Description: GIIM Note: maturase Location: 5027660-5027885 bp Feature: gene Location: 5028211-5028522 bp Ori: ABX51408.1 Feature: domain Description: InsE Location: 5028226-5028511 bp Feature: domain Description: InsE Location: 5028226-502851 1 bp Feature: gene Location: 5028576-5029388 bp Ori: ABX51409.1 Feature: domain Description: PHA02517 Location: 5028579-5029365 bp Feature: domain Description: PHA0251 7 Location: 5028579-5029365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10636 (putative ABC transporter ATP-binding protein; Provisional), TIGR02443 (conserved hypothetical metal-binding protein), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YhaK (COG1741), PRK11776 (ATP-dependent RNA helicase DbpA; Provisional), RarD (COG2962), Lrp (COG1522), AAA_15 (pfam13175)
TOPRIM_OLD (cd01026), TauE (pfam01925), GSDH (pfam07995), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains ), RVT-UG5, nitrilase (cl11424), metK (TIGR01034), CHAT (pfam12770)
PRK10358 (tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL)