myRT

myRT report for GCA_000019065.1_ASM1906v1

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Seq: CP000923.1 Thermoanaerobacter sp. X514, complete genome (2457259 bp)
Overview 1 RT 1: 151949-159301 bp 2 RT 2: 165517-171415 bp 3 RT 3: 388981-397389 bp 4 RT 4: 499537-504477 bp 5 RT 5: 771760-780870 bp 6 RT 6: 861130-868456 bp 7 RT 7: 1284142-1289471 bp 8 RT 8: 1361963-1368130 bp 9 RT 9: 2034626-2039288 bp 10 RT 10: 2223434-2230483 bp Neighborhood of RT #1 [151949, 159303] FGGY_D-XK_EcXK-like xylF RVT-GII GIIM PRK13549 XylH Neighborhood of RT #2 [165517, 171432] rbsC PRK10653 RVT-GII GIIM RpiR NagE Neighborhood of RT #3 [388981, 397403] HTH_32 rve Mu-transpos_C ExeA RVT-GII pyruv_ox_red HDGYP Neighborhood of RT #4 [499537, 504518] PRK12454 FmnP RVT-GII GIIM TsaE T6A_YeaZ Neighborhood of RT #5 [771760, 780929] Tar TPP_E1_PDC_ADC_BCADC RVT-GII GIIM AcoR HTH_CRP NagC Neighborhood of RT #6 [861130, 868456] PRK11177 PRK12740 RVT-GII GIIM PRK07232 Neighborhood of RT #7 [1284142, 1289479] PRK12459 ParB_N_like_MT YhdJ RVT-GII GIIM DUF4314 Neighborhood of RT #8 [1361963, 1368159] ArsP_1 HTH_ARSR RVT-GII ExeA Neighborhood of RT #9 [2034626, 2039296] NifS CsoR-like_DUF156 RVT-GII GIIM ferrit_encaps Neighborhood of RT #10 [2223434, 2230518] PgsA RVT-GII GIIM RNaseH_like MFS_MMR_MDR_like Feature: gene Location: 151949-153451 bp Ori: ABY91473.1 Feature: domain Description: FGGY_D-XK_EcXK-like Location: 151955-153407 bp Feature: domain Description: FGGY_D-XK_EcXK-like Location: 1 51 955-1 53407 bp Feature: gene Location: 153538-154644 bp Ori: ABY91474.1 Feature: domain Description: xylF Location: 153667-154606 bp Feature: domain Description: xylF Location: 1 53667-1 54606 bp Feature: gene Location: 155103-156515 bp Ori: ABY91475.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155451-156069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 55451 -1 56069 bp Feature: domain Description: GIIM Note: maturase Location: 156120-156345 bp Feature: domain Description: GIIM Note: maturase Location: 1 561 20-1 56345 bp Feature: gene Location: 156614-158137 bp Ori: ABY91476.1 Feature: domain Description: PRK13549 Location: 156617-158129 bp Feature: domain Description: PRK1 3549 Location: 1 5661 7-1 581 29 bp Feature: gene Location: 158137-159303 bp Ori: ABY91477.1 Feature: domain Description: XylH Location: 158179-159301 bp Feature: domain Description: XylH Location: 1 581 79-1 59301 bp Feature: gene Location: 165517-166473 bp Ori: ABY91484.1 Feature: domain Description: rbsC Location: 165544-166465 bp Feature: domain Description: rbsC Location: 1 65544-1 66465 bp Feature: gene Location: 166556-167479 bp Ori: ABY91485.1 Feature: domain Description: PRK10653 Location: 166646-167477 bp Feature: domain Description: PRK1 0653 Location: 1 66646-1 67477 bp Feature: gene Location: 167982-169394 bp Ori: ABY91486.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168330-168948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 68330-1 68948 bp Feature: domain Description: GIIM Note: maturase Location: 168999-169224 bp Feature: domain Description: GIIM Note: maturase Location: 1 68999-1 69224 bp Feature: gene Location: 170094-170936 bp Ori: ABY91487.1 Feature: domain Description: RpiR Location: 170112-170925 bp Feature: domain Description: RpiR Location: 1 701 1 2-1 70925 bp Feature: gene Location: 170950-171432 bp Ori: ABY91488.1 Feature: domain Description: NagE Location: 170974-171415 bp Feature: domain Description: NagE Location: 1 70974-1 71 41 5 bp Feature: gene Location: 388981-390306 bp Ori: ABY91693.1 Feature: domain Description: HTH_32 Location: 389146-389377 bp Feature: domain Description: HTH_32 Location: 3891 46-389377 bp Feature: domain Description: rve Location: 389452-389791 bp Feature: domain Description: rve Location: 389452-389791 bp Feature: domain Description: Mu-transpos_C Location: 389983-390148 bp Feature: domain Description: Mu-transpos_C Location: 389983-3901 48 bp Feature: gene Location: 390324-391124 bp Ori: ABY91694.1 Feature: domain Description: ExeA Location: 390330-391095 bp Feature: domain Description: ExeA Location: 390330-391 095 bp Feature: gene Location: 391294-392334 bp Ori: ABY91695.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391642-392260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391 642-392260 bp Feature: gene Location: 392786-396313 bp Ori: ABY91696.1 Feature: domain Description: pyruv_ox_red Location: 392801-396302 bp Feature: domain Description: pyruv_ox_red Location: 392801 -396302 bp Feature: gene Location: 396804-397403 bp Ori: ABY91697.1 Feature: domain Description: HDGYP Location: 396855-397389 bp Feature: domain Description: HDGYP Location: 396855-397389 bp Feature: gene Location: 499537-500478 bp Ori: ABY91795.1 Feature: domain Description: PRK12454 Location: 499540-500470 bp Feature: domain Description: PRK1 2454 Location: 499540-500470 bp Feature: gene Location: 500772-501356 bp Ori: ABY91796.1 Feature: domain Description: FmnP Location: 500787-501354 bp Feature: domain Description: FmnP Location: 500787-501 354 bp Feature: gene Location: 501819-503231 bp Ori: ABY91797.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502167-502785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5021 67-502785 bp Feature: domain Description: GIIM Note: maturase Location: 502836-503061 bp Feature: domain Description: GIIM Note: maturase Location: 502836-503061 bp Feature: gene Location: 503368-503829 bp Ori: ABY91798.1 Feature: domain Description: TsaE Location: 503383-503818 bp Feature: domain Description: TsaE Location: 503383-50381 8 bp Feature: gene Location: 503826-504518 bp Ori: ABY91799.1 Feature: domain Description: T6A_YeaZ Location: 503835-504477 bp Feature: domain Description: T6A_YeaZ Location: 503835-504477 bp Feature: gene Location: 771760-771996 bp Ori: ABY92052.1 Feature: domain Description: Tar Location: 771769-771928 bp Feature: domain Description: Tar Location: 771 769-771 928 bp Feature: gene Location: 773683-774471 bp Ori: ABY92053.1 Feature: domain Description: TPP_E1_PDC_ADC_BCADC Location: 773716-774145 bp Feature: domain Description: TPP_E1 _PDC_ADC_BCADC Location: 77371 6-7741 45 bp Feature: gene Location: 775073-776485 bp Ori: ABY92054.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775421-776039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775421 -776039 bp Feature: domain Description: GIIM Note: maturase Location: 776090-776315 bp Feature: domain Description: GIIM Note: maturase Location: 776090-77631 5 bp Feature: gene Location: 776656-778386 bp Ori: ABY92055.1 Feature: domain Description: AcoR Location: 776659-778378 bp Feature: domain Description: AcoR Location: 776659-778378 bp Feature: gene Location: 779703-780929 bp Ori: ABY92056.1 Feature: domain Description: HTH_CRP Location: 779772-779916 bp Feature: domain Description: HTH_CRP Location: 779772-77991 6 bp Feature: domain Description: NagC Location: 779940-780870 bp Feature: domain Description: NagC Location: 779940-780870 bp Feature: gene Location: 861130-862851 bp Ori: ABY92130.1 Feature: domain Description: PRK11177 Location: 861133-862840 bp Feature: domain Description: PRK1 1 1 77 Location: 861 1 33-862840 bp Feature: gene Location: 862970-865009 bp Ori: ABY92131.1 Feature: domain Description: PRK12740 Location: 863015-864977 bp Feature: domain Description: PRK1 2740 Location: 86301 5-864977 bp Feature: gene Location: 865457-866869 bp Ori: ABY92132.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 865805-866423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 865805-866423 bp Feature: domain Description: GIIM Note: maturase Location: 866474-866699 bp Feature: domain Description: GIIM Note: maturase Location: 866474-866699 bp Feature: gene Location: 867028-868239 bp Ori: ABY92133.1 Feature: domain Description: PRK07232 Location: 867037-868234 bp Feature: domain Description: PRK07232 Location: 867037-868234 bp Feature: gene Location: 868265-868456 bp Feature: gene Location: 1284142-1285317 bp Ori: ABY92537.1 Feature: domain Description: PRK12459 Location: 1284145-1285294 bp Feature: domain Description: PRK1 2459 Location: 1 2841 45-1 285294 bp Feature: gene Location: 1285298-1286536 bp Ori: ABY92538.1 Feature: domain Description: ParB_N_like_MT Location: 1285337-1285586 bp Feature: domain Description: ParB_N_like_MT Location: 1 285337-1 285586 bp Feature: domain Description: YhdJ Location: 1285766-1286444 bp Feature: domain Description: YhdJ Location: 1 285766-1 286444 bp Feature: gene Location: 1287128-1288411 bp Ori: ABY92539.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1287377-1288061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 287377-1 288061 bp Feature: domain Description: GIIM Note: maturase Location: 1288130-1288364 bp Feature: domain Description: GIIM Note: maturase Location: 1 2881 30-1 288364 bp Feature: gene Location: 1288563-1289252 bp Feature: gene Location: 1289252-1289479 bp Ori: ABY92541.1 Feature: domain Description: DUF4314 Location: 1289270-1289471 bp Feature: domain Description: DUF431 4 Location: 1 289270-1 289471 bp Feature: gene Location: 1361963-1363132 bp Ori: ABY92615.1 Feature: domain Description: ArsP_1 Location: 1362068-1363121 bp Feature: domain Description: ArsP_1 Location: 1 362068-1 3631 21 bp Feature: gene Location: 1363184-1363507 bp Ori: ABY92616.1 Feature: domain Description: HTH_ARSR Location: 1363223-1363415 bp Feature: domain Description: HTH_ARSR Location: 1 363223-1 36341 5 bp Feature: gene Location: 1364264-1365175 bp Ori: ABY92617.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1364612-1365164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36461 2-1 3651 64 bp Feature: gene Location: 1365283-1365879 bp Feature: gene Location: 1367359-1368159 bp Ori: ABY92619.1 Feature: domain Description: ExeA Location: 1367365-1368130 bp Feature: domain Description: ExeA Location: 1 367365-1 3681 30 bp Feature: gene Location: 2034626-2035777 bp Ori: ABY93297.1 Feature: domain Description: NifS Location: 2034629-2035766 bp Feature: domain Description: NifS Location: 2034629-2035766 bp Feature: gene Location: 2035860-2036126 bp Ori: ABY93298.1 Feature: domain Description: CsoR-like_DUF156 Location: 2035881-2036112 bp Feature: domain Description: CsoR-like_DUF1 56 Location: 2035881 -20361 1 2 bp Feature: gene Location: 2036293-2037705 bp Ori: ABY93299.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2036641-2037259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2036641 -2037259 bp Feature: domain Description: GIIM Note: maturase Location: 2037310-2037535 bp Feature: domain Description: GIIM Note: maturase Location: 203731 0-2037535 bp Feature: gene Location: 2038154-2038825 bp Feature: gene Location: 2038985-2039296 bp Ori: ABY93301.1 Feature: domain Description: ferrit_encaps Location: 2039009-2039288 bp Feature: domain Description: ferrit_encaps Location: 2039009-2039288 bp Feature: gene Location: 2223434-2223949 bp Ori: ABY93492.1 Feature: domain Description: PgsA Location: 2223437-2223935 bp Feature: domain Description: PgsA Location: 2223437-2223935 bp Feature: gene Location: 2224015-2224509 bp Feature: gene Location: 2225667-2227079 bp Ori: ABY93494.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2226015-2226633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222601 5-2226633 bp Feature: domain Description: GIIM Note: maturase Location: 2226684-2226909 bp Feature: domain Description: GIIM Note: maturase Location: 2226684-2226909 bp Feature: gene Location: 2227528-2227986 bp Ori: ABY93495.1 Feature: domain Description: RNaseH_like Location: 2227543-2227966 bp Feature: domain Description: RNaseH_like Location: 2227543-2227966 bp Feature: gene Location: 2229121-2230518 bp Ori: ABY93496.1 Feature: domain Description: MFS_MMR_MDR_like Location: 2229169-2230483 bp Feature: domain Description: MFS_MMR_MDR_like Location: 22291 69-2230483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FGGY_D-XK_EcXK-like (cd07808), xylF (TIGR02634), RVT-GII, GIIM (pfam08388), PRK13549 (xylose transporter ATP-binding subunit; Provisional), XylH (COG4214), rbsC (PRK09512), PRK10653 (ribose ABC transporter substrate-binding protein RbsB), RpiR (COG1737), NagE (COG2190)
HTH_32 (pfam13565), rve (pfam00665), Mu-transpos_C (pfam09299), ExeA (COG3267), pyruv_ox_red (TIGR02176), HDGYP (COG2206), PRK12454 (carbamate kinase-like carbamoyl phosphate synthetase; Reviewed), FmnP (COG3601), TsaE (pfam02367), T6A_YeaZ (TIGR03725)
Tar (COG0840), TPP_E1_PDC_ADC_BCADC (cd02000), AcoR (COG3284), HTH_CRP (smart00419), NagC (COG1940), PRK11177 (phosphoenolpyruvate-protein phosphotransferase PtsI), PRK12740 (elongation factor G-like protein EF-G2), PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed), PRK12459 (S-adenosylmethionine synthetase; Provisional), ParB_N_like_MT (cd16844)
YhdJ (COG0863), DUF4314 (pfam14192), ArsP_1 (pfam03773), HTH_ARSR (smart00418), NifS (COG1104), CsoR-like_DUF156 (cl00846), ferrit_encaps (TIGR04535), PgsA (COG0558), RNaseH_like (pfam04308), MFS_MMR_MDR_like (cd17504)