myRT

myRT report for GCA_000019245.3_ASM1924v3

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Seq: CP001084.2 Lactobacillus paracasei strain Zhang, complete genome (2861969 bp)
Overview 1 RT 1: 1-6452 bp 2 RT 2: 1287504-1293278 bp 3 RT 3: 1861119-1864141 bp 4 RT 4: 2165167-2174216 bp Neighborhood of RT #1 [1, 6463] dnaA PRK05643 RVT-GII GIIM YbcJ recF Neighborhood of RT #2 [1287504, 1293295] tig ClpX RVT-GII GIIM engB NTP-PPase_u4 Neighborhood of RT #3 [1861119, 1864141] RVT-UG2 Neighborhood of RT #4 [2165167, 2174269] mutL PRK05399 RVT-GII GIIM AA_permease_2 DUF1827 Feature: gene Location: 1-1350 bp Ori: ADK17299.1 Feature: domain Description: dnaA Location: 13-1339 bp Feature: domain Description: dnaA Location: 1 3-1 339 bp Feature: gene Location: 1523-2662 bp Ori: ADK17300.1 Feature: domain Description: PRK05643 Location: 1526-2657 bp Feature: domain Description: PRK05643 Location: 1 526-2657 bp Feature: gene Location: 3151-4533 bp Ori: ADK17301.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3469-4087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3469-4087 bp Feature: domain Description: GIIM Note: maturase Location: 4144-4354 bp Feature: domain Description: GIIM Note: maturase Location: 41 44-4354 bp Feature: gene Location: 5139-5351 bp Ori: ADK17302.1 Feature: domain Description: YbcJ Location: 5142-5346 bp Feature: domain Description: YbcJ Location: 51 42-5346 bp Feature: gene Location: 5348-6463 bp Ori: ADK17303.1 Feature: domain Description: recF Location: 5351-6452 bp Feature: domain Description: recF Location: 5351 -6452 bp Feature: gene Location: 1287504-1288841 bp Ori: ADK18559.1 Feature: domain Description: tig Location: 1287507-1288806 bp Feature: domain Description: tig Location: 1 287507-1 288806 bp Feature: gene Location: 1289036-1290286 bp Ori: ADK18560.1 Feature: domain Description: ClpX Location: 1289078-1290272 bp Feature: domain Description: ClpX Location: 1 289078-1 290272 bp Feature: gene Location: 1290770-1292152 bp Ori: ADK18561.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1291088-1291706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 291 088-1 291 706 bp Feature: domain Description: GIIM Note: maturase Location: 1291763-1291973 bp Feature: domain Description: GIIM Note: maturase Location: 1 291 763-1 291 973 bp Feature: gene Location: 1292405-1293001 bp Ori: ADK18562.1 Feature: domain Description: engB Location: 1292408-1292981 bp Feature: domain Description: engB Location: 1 292408-1 292981 bp Feature: gene Location: 1293005-1293295 bp Ori: ADK18563.1 Feature: domain Description: NTP-PPase_u4 Location: 1293020-1293278 bp Feature: domain Description: NTP-PPase_u4 Location: 1 293020-1 293278 bp Feature: gene Location: 1861119-1861274 bp Feature: gene Location: 1861419-1861643 bp Feature: gene Location: 1862081-1863496 bp Ori: ADK19123.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1862333-1863155 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 862333-1 8631 55 bp Feature: gene Location: 1863642-1863794 bp Feature: gene Location: 1864001-1864141 bp Feature: gene Location: 2165167-2167122 bp Ori: ADK19410.1 Feature: domain Description: mutL Location: 2165176-2167084 bp Feature: domain Description: mutL Location: 21 651 76-21 67084 bp Feature: gene Location: 2167127-2169709 bp Ori: ADK19411.2 Feature: domain Description: PRK05399 Location: 2167145-2169701 bp Feature: domain Description: PRK05399 Location: 21 671 45-21 69701 bp Feature: gene Location: 2170001-2171383 bp Ori: ADK19413.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2170319-2170937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 7031 9-21 70937 bp Feature: domain Description: GIIM Note: maturase Location: 2170994-2171204 bp Feature: domain Description: GIIM Note: maturase Location: 21 70994-21 71 204 bp Feature: gene Location: 2171866-2173695 bp Ori: ADK19414.1 Feature: domain Description: AA_permease_2 Location: 2171935-2173195 bp Feature: domain Description: AA_permease_2 Location: 21 71 935-21 731 95 bp Feature: gene Location: 2173925-2174269 bp Ori: ADK19415.1 Feature: domain Description: DUF1827 Location: 2173928-2174216 bp Feature: domain Description: DUF1 827 Location: 21 73928-21 7421 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaA (PRK14088), PRK05643 (DNA polymerase III subunit beta; Validated), RVT-GII, GIIM (pfam08388), YbcJ (COG2501), recF (PRK14079), tig (TIGR00115), ClpX (COG1219), engB (PRK00454), NTP-PPase_u4 (cd11541)
RVT-UG2, mutL (PRK00095), PRK05399 (DNA mismatch repair protein MutS; Provisional), AA_permease_2 (pfam13520), DUF1827 (pfam08860)