myRT

myRT report for GCA_000019445.1_ASM1944v1

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Seq: CP000949.1 Pseudomonas putida W619, complete genome (5774330 bp)
Overview 1 RT 1: 396783-405019 bp 2 RT 2: 4000293-4007919 bp Neighborhood of RT #1 [396783, 405063] PRK07232 MrcA RVT_N RVT-GII GIIM HNH PilM PilN Neighborhood of RT #2 [4000293, 4007936] UPF0547 RVT-Retrons ligA ligA Feature: gene Location: 396783-398060 bp Ori: ACA70886.1 Feature: domain Description: PRK07232 Location: 396801-398010 bp Feature: domain Description: PRK07232 Location: 396801 -39801 0 bp Feature: gene Location: 398202-400655 bp Ori: ACA70887.1 Feature: domain Description: MrcA Location: 398208-400581 bp Feature: domain Description: MrcA Location: 398208-400581 bp Feature: gene Location: 400786-402492 bp Ori: ACA70888.1 Feature: domain Description: RVT_N Location: 400843-401086 bp Feature: domain Description: RVT_N Location: 400843-401 086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401131-401767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 401 1 31 -401 767 bp Feature: domain Description: GIIM Note: maturase Location: 401818-402052 bp Feature: domain Description: GIIM Note: maturase Location: 401 81 8-402052 bp Feature: domain Description: HNH Note: nucleases Location: 402304-402442 bp Feature: domain Description: HNH Note: nucleases Location: 402304-402442 bp Feature: gene Location: 403679-404527 bp Ori: ACA70889.1 Feature: domain Description: PilM Location: 403682-404213 bp Feature: domain Description: PilM Location: 403682-40421 3 bp Feature: gene Location: 404527-405063 bp Ori: ACA70890.1 Feature: domain Description: PilN Location: 404533-405019 bp Feature: domain Description: PilN Location: 404533-40501 9 bp Feature: gene Location: 4000293-4001057 bp Feature: gene Location: 4001727-4002077 bp Ori: ACA74079.1 Feature: domain Description: UPF0547 Location: 4001865-4001922 bp Feature: domain Description: UPF0547 Location: 4001 865-4001 922 bp Feature: gene Location: 4002391-4003515 bp Ori: ACA74080.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4002556-4003108 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4002556-40031 08 bp Feature: gene Location: 4004304-4005137 bp Feature: gene Location: 4005606-4007936 bp Ori: ACA74082.1 Feature: domain Description: ligA Location: 4005612-4007406 bp Feature: domain Description: ligA Location: 400561 2-4007406 bp Feature: domain Description: ligA Location: 4007418-4007919 bp Feature: domain Description: ligA Location: 400741 8-400791 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed), MrcA (COG5009), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PilM (pfam07419), PilN (pfam05137), UPF0547 (pfam10571), RVT-Retrons
ligA (PRK14351)