myRT

myRT report for GCA_000019505.1_ASM1950v1

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Seq: CP000960.1 Burkholderia cenocepacia MC0-3 chromosome 3, complete sequence (1224595 bp)
Overview 1 RT 1: 647839-653167 bp Neighborhood of RT #1 [647839, 653172] MFS_MucK Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 647839-649086 bp Ori: ACA95703.1 Feature: domain Description: MFS_MucK Location: 647929-649063 bp Feature: domain Description: MFS_MucK Location: 647929-649063 bp Feature: gene Location: 649372-649701 bp Ori: ACA95704.1 Feature: domain Description: Histone_HNS Location: 649393-649630 bp Feature: domain Description: Histone_HNS Location: 649393-649630 bp Feature: gene Location: 650020-651369 bp Ori: ACA95705.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 650485-651121 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 650485-651 1 21 bp Feature: gene Location: 651622-652194 bp Ori: ACA95706.1 Feature: domain Description: FIN Location: 651802-652159 bp Feature: domain Description: FIN Location: 651 802-6521 59 bp Feature: gene Location: 652417-653172 bp Ori: ACA95707.1 Feature: domain Description: his_ut_repres Location: 652495-653167 bp Feature: domain Description: his_ut_repres Location: 652495-6531 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MucK (cd17371), Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: CP000959.1 Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence (3213911 bp)
Overview 1 RT 1: 440973-447855 bp 2 RT 2: 798685-803686 bp Neighborhood of RT #1 [440973, 447911] Gmd GDP_MD_SDR_e RVT-GII GIIM PRK08133 PRK09246 Neighborhood of RT #2 [798685, 803736] SDR_a7 HTH_31 MLTR_LBD RVT-GII GIIM RimI Feature: gene Location: 440973-442019 bp Ori: ACA92711.1 Feature: domain Description: Gmd Location: 440988-442005 bp Feature: domain Description: Gmd Location: 440988-442 005 bp Feature: gene Location: 442006-442971 bp Ori: ACA92712.1 Feature: domain Description: GDP_MD_SDR_e Location: 442042-442939 bp Feature: domain Description: GDP_MD_SDR_e Location: 442 042 -442 939 bp Feature: gene Location: 443092-444381 bp Ori: ACA92713.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443347-443962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 443347-443962 bp Feature: domain Description: GIIM Note: maturase Location: 444022-444223 bp Feature: domain Description: GIIM Note: maturase Location: 44402 2 -4442 2 3 bp Feature: gene Location: 444928-446118 bp Ori: ACA92714.1 Feature: domain Description: PRK08133 Location: 444934-446113 bp Feature: domain Description: PRK08133 Location: 444934-446113 bp Feature: gene Location: 446379-447911 bp Ori: ACA92715.1 Feature: domain Description: PRK09246 Location: 446382-447855 bp Feature: domain Description: PRK092 46 Location: 446382 -447855 bp Feature: gene Location: 798685-799578 bp Ori: ACA93026.1 Feature: domain Description: SDR_a7 Location: 798688-799552 bp Feature: domain Description: SDR_a7 Location: 798688-799552 bp Feature: gene Location: 799674-800531 bp Ori: ACA93027.1 Feature: domain Description: HTH_31 Location: 799701-799932 bp Feature: domain Description: HTH_31 Location: 799701-799932 bp Feature: domain Description: MLTR_LBD Location: 799989-800484 bp Feature: domain Description: MLTR_LBD Location: 799989-800484 bp Feature: gene Location: 800722-802089 bp Ori: ACA93028.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801055-801670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801055-801670 bp Feature: domain Description: GIIM Note: maturase Location: 801730-801931 bp Feature: domain Description: GIIM Note: maturase Location: 801730-801931 bp Feature: gene Location: 802554-802937 bp Feature: gene Location: 803215-803736 bp Ori: ACA93030.1 Feature: domain Description: RimI Location: 803356-803686 bp Feature: domain Description: RimI Location: 803356-803686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), PRK08133 (O-succinylhomoserine sulfhydrylase; Validated), PRK09246 (amidophosphoribosyltransferase; Provisional), SDR_a7 (cd05262), HTH_31 (pfam13560), MLTR_LBD (pfam17765), RimI (COG0456)

Seq: CP000958.1 Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence (3532883 bp)
Overview 1 RT 1: 296173-301373 bp 2 RT 2: 875252-882353 bp 3 RT 3: 2174973-2180008 bp 4 RT 4: 2228221-2233975 bp Neighborhood of RT #1 [296173, 301381] YcbL-like_MBL-fold RlpA RVT-GII GIIM RsmI PRK14673 Neighborhood of RT #2 [875252, 882382] PRK05341 fum_ac_acetase RVT-GII GIIM MFS_YcaD_like AraJ Neighborhood of RT #3 [2174973, 2180016] HDAC_classII_1 RVT-GII GIIM HpnD Neighborhood of RT #4 [2228221, 2233975] LigT PRK07883 RVT-GII GIIM guaA Feature: gene Location: 296173-296817 bp Ori: ACA89447.1 Feature: domain Description: YcbL-like_MBL-fold Location: 296185-296749 bp Feature: domain Description: YcbL-like_MBL-fold Location: 296185-296749 bp Feature: gene Location: 297475-298086 bp Ori: ACA89448.1 Feature: domain Description: RlpA Location: 297544-298051 bp Feature: domain Description: RlpA Location: 297544-298051 bp Feature: gene Location: 298622-299911 bp Ori: ACA89449.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298877-299492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 298877-299492 bp Feature: domain Description: GIIM Note: maturase Location: 299552-299753 bp Feature: domain Description: GIIM Note: maturase Location: 299552-299753 bp Feature: gene Location: 300019-300906 bp Ori: ACA89450.1 Feature: domain Description: RsmI Location: 300067-300880 bp Feature: domain Description: RsmI Location: 3 00067-3 00880 bp Feature: gene Location: 300953-301381 bp Ori: ACA89451.1 Feature: domain Description: PRK14673 Location: 300956-301373 bp Feature: domain Description: PRK14673 Location: 3 00956-3 013 73 bp Feature: gene Location: 875252-876586 bp Ori: ACA89967.1 Feature: domain Description: PRK05341 Location: 875270-876581 bp Feature: domain Description: PRK053 41 Location: 875270-876581 bp Feature: gene Location: 876583-877887 bp Ori: ACA89968.1 Feature: domain Description: fum_ac_acetase Location: 876634-877876 bp Feature: domain Description: fum_ac_acetase Location: 87663 4-877876 bp Feature: gene Location: 878383-879750 bp Ori: ACA89969.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878716-879331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 878716-8793 3 1 bp Feature: domain Description: GIIM Note: maturase Location: 879391-879592 bp Feature: domain Description: GIIM Note: maturase Location: 8793 91-879592 bp Feature: gene Location: 879948-881108 bp Ori: ACA89970.1 Feature: domain Description: MFS_YcaD_like Location: 879984-881067 bp Feature: domain Description: MFS_YcaD_like Location: 879984-881067 bp Feature: gene Location: 881213-882382 bp Ori: ACA89971.1 Feature: domain Description: AraJ Location: 881216-882353 bp Feature: domain Description: AraJ Location: 881216-8823 53 bp Feature: gene Location: 2174973-2176082 bp Ori: ACA91115.1 Feature: domain Description: HDAC_classII_1 Location: 2174985-2176065 bp Feature: domain Description: HDAC_classII_1 Location: 2174985-2176065 bp Feature: gene Location: 2176194-2176421 bp Feature: gene Location: 2176518-2177807 bp Ori: ACA91117.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2176773-2177388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2176773 -21773 88 bp Feature: domain Description: GIIM Note: maturase Location: 2177448-2177649 bp Feature: domain Description: GIIM Note: maturase Location: 2177448-2177649 bp Feature: gene Location: 2178380-2178676 bp Feature: gene Location: 2179114-2180016 bp Ori: ACA91119.1 Feature: domain Description: HpnD Location: 2179216-2180008 bp Feature: domain Description: HpnD Location: 2179216-2180008 bp Feature: gene Location: 2228221-2228844 bp Ori: ACA91167.1 Feature: domain Description: LigT Location: 2228311-2228824 bp Feature: domain Description: LigT Location: 22283 11-2228824 bp Feature: gene Location: 2228948-2229586 bp Ori: ACA91168.1 Feature: domain Description: PRK07883 Location: 2228978-2229530 bp Feature: domain Description: PRK07883 Location: 2228978-222953 0 bp Feature: gene Location: 2229726-2231015 bp Ori: ACA91169.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2229981-2230596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2229981-223 0596 bp Feature: domain Description: GIIM Note: maturase Location: 2230656-2230857 bp Feature: domain Description: GIIM Note: maturase Location: 223 0656-223 0857 bp Feature: gene Location: 2231649-2233268 bp Ori: ACA91170.1 Feature: domain Description: guaA Location: 2231655-2233266 bp Feature: domain Description: guaA Location: 223 1655-223 3 266 bp Feature: gene Location: 2233376-2233975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YcbL-like_MBL-fold (cd07737), RlpA (COG0797), RVT-GII, GIIM (pfam08388), RsmI (COG0313), PRK14673 (hypothetical protein; Provisional), PRK05341 (homogentisate 1,2-dioxygenase; Provisional), fum_ac_acetase (TIGR01266), MFS_YcaD_like (cd17477), AraJ (COG2814)
HDAC_classII_1 (cd09996), HpnD (TIGR03465), LigT (COG1514), PRK07883 (DEDD exonuclease domain-containing protein), guaA (PRK00074)