myRT

myRT report for GCA_000020045.1_ASM2004v1

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Seq: CP001046.1 Paraburkholderia phymatum STM815 plasmid pBPHY02, complete sequence (595108 bp)
Overview 1 RT 1: 167155-171254 bp 2 RT 2: 232355-238869 bp Neighborhood of RT #1 [167155, 171646] Abhydrolase_1 Abhydrolase_4 DUF772 IS5 RVT-GII Neighborhood of RT #2 [232355, 239129] Zn_Tnp_IS91 Y2_Tnp Phage_int_SAM_4 INT_IntI_C RVT_N RVT-GII GIIM TnpB_IS66 InsE Feature: gene Location: 167155-168996 bp Ori: ACC76373.1 Feature: domain Description: Abhydrolase_1 Location: 167530-168073 bp Feature: domain Description: Abhydrolase_1 Location: 1 67530-1 68073 bp Feature: domain Description: Abhydrolase_4 Location: 168568-168844 bp Feature: domain Description: Abhydrolase_4 Location: 1 68568-1 68844 bp Feature: gene Location: 169036-170160 bp Ori: ACC76374.1 Feature: domain Description: DUF772 Location: 169132-169216 bp Feature: domain Description: DUF772 Location: 1 691 32-1 6921 6 bp Feature: domain Description: IS5 Location: 169513-170113 bp Feature: domain Description: IS5 Location: 1 6951 3-1 701 1 3 bp Feature: gene Location: 170153-171646 bp Ori: ACC76375.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170564-171254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 70564-1 71 254 bp Feature: gene Location: 232355-233563 bp Ori: ACC76420.1 Feature: domain Description: Zn_Tnp_IS91 Location: 232385-232661 bp Feature: domain Description: Zn_Tnp_IS91 Location: 232385-232661 bp Feature: domain Description: Y2_Tnp Location: 232787-233345 bp Feature: domain Description: Y2_Tnp Location: 232787-233345 bp Feature: gene Location: 233572-234450 bp Ori: ACC76421.1 Feature: domain Description: Phage_int_SAM_4 Location: 233584-233830 bp Feature: domain Description: Phage_int_SAM_4 Location: 233584-233830 bp Feature: domain Description: INT_IntI_C Location: 233866-234355 bp Feature: domain Description: INT_IntI_C Location: 233866-234355 bp Feature: gene Location: 235360-236871 bp Ori: ACC76422.1 Feature: domain Description: RVT_N Location: 235423-235660 bp Feature: domain Description: RVT_N Location: 235423-235660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235711-236353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23571 1 -236353 bp Feature: domain Description: GIIM Note: maturase Location: 236404-236638 bp Feature: domain Description: GIIM Note: maturase Location: 236404-236638 bp Feature: gene Location: 238312-238665 bp Ori: ACC76423.1 Feature: domain Description: TnpB_IS66 Location: 238339-238630 bp Feature: domain Description: TnpB_IS66 Location: 238339-238630 bp Feature: gene Location: 238665-239129 bp Ori: ACC76424.1 Feature: domain Description: InsE Location: 238728-238869 bp Feature: domain Description: InsE Location: 238728-238869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Abhydrolase_1 (pfam00561), Abhydrolase_4 (pfam08386), DUF772 (pfam05598), IS5 (COG3039), RVT-GII, Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), RVT_N (pfam13655)
GIIM (pfam08388), TnpB_IS66 (pfam05717), InsE (COG2963)

Seq: CP001043.1 Paraburkholderia phymatum STM815 chromosome 1, complete sequence (3479187 bp)
Overview 1 RT 1: 505276-512176 bp Neighborhood of RT #1 [505276, 512181] R_switched_YjbE PilE RVT_N RVT-GII GIIM HNHc PglL_A Wzy_C Wzy_C_2 moaC Feature: gene Location: 505276-505989 bp Ori: ACC69637.1 Feature: domain Description: R_switched_YjbE Location: 505312-505849 bp Feature: domain Description: R_switched_YjbE Location: 505312 -505849 bp Feature: gene Location: 506140-506757 bp Ori: ACC69638.1 Feature: domain Description: PilE Location: 506245-506383 bp Feature: domain Description: PilE Location: 5062 45-506383 bp Feature: gene Location: 507997-509703 bp Ori: ACC69639.1 Feature: domain Description: RVT_N Location: 508054-508297 bp Feature: domain Description: RVT_N Location: 508054-5082 97 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 508342-508990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 508342 -508990 bp Feature: domain Description: GIIM Note: maturase Location: 509041-509275 bp Feature: domain Description: GIIM Note: maturase Location: 509041-5092 75 bp Feature: domain Description: HNHc Note: nucleases Location: 509506-509659 bp Feature: domain Description: HNHc Note: nucleases Location: 509506-509659 bp Feature: gene Location: 509828-511618 bp Ori: ACC69640.1 Feature: domain Description: PglL_A Location: 510335-510407 bp Feature: domain Description: PglL_A Location: 510335-510407 bp Feature: domain Description: Wzy_C Location: 510449-510917 bp Feature: domain Description: Wzy_C Location: 510449-510917 bp Feature: domain Description: Wzy_C_2 Location: 510983-511484 bp Feature: domain Description: Wzy_C_2 Location: 510983-511484 bp Feature: gene Location: 511705-512181 bp Ori: ACC69641.1 Feature: domain Description: moaC Location: 511711-512176 bp Feature: domain Description: moaC Location: 511711-512 176 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT R_switched_YjbE (TIGR03717), PilE (COG4968), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PglL_A (pfam15864), Wzy_C (pfam04932), Wzy_C_2 (pfam11846), moaC (TIGR00581)