myRT

myRT report for GCA_000020185.1_ASM2018v1

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Seq: CP001062.1 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence (210919 bp)
Overview 1 RT 1: 33109-37010 bp 2 RT 2: 164928-168244 bp Neighborhood of RT #1 [33109, 37012] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 InsE Neighborhood of RT #2 [164928, 168246] PAP2_acid_phosphatase Tra5 RVT-GII InsE PHA02517 Feature: gene Location: 33109-33594 bp Ori: ACD06190.1 Feature: domain Description: COG3547 Location: 33127-33580 bp Feature: domain Description: COG3547 Location: 331 27-33580 bp Feature: gene Location: 33621-33767 bp Ori: ACD06119.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 33633-33744 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 33633-33744 bp Feature: gene Location: 33883-35100 bp Ori: ACD06106.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34069-34723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34069-34723 bp Feature: domain Description: GIIM Note: maturase Location: 34801-35023 bp Feature: domain Description: GIIM Note: maturase Location: 34801 -35023 bp Feature: gene Location: 35578-35715 bp Ori: ACD06184.1 Feature: domain Description: DDE_Tnp_IS66 Location: 35590-35689 bp Feature: domain Description: DDE_Tnp_IS66 Location: 35590-35689 bp Feature: gene Location: 36686-37012 bp Ori: ACD06104.1 Feature: domain Description: InsE Location: 36689-37010 bp Feature: domain Description: InsE Location: 36689-3701 0 bp Feature: gene Location: 164928-165677 bp Ori: ACD06129.1 Feature: domain Description: PAP2_acid_phosphatase Location: 165003-165657 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 65003-1 65657 bp Feature: gene Location: 166052-166273 bp Ori: ACD06075.1 Feature: domain Description: Tra5 Location: 166064-166256 bp Feature: domain Description: Tra5 Location: 1 66064-1 66256 bp Feature: gene Location: 166286-166981 bp Ori: ACD06256.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166586-166979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 66586-1 66979 bp Feature: gene Location: 167033-167359 bp Ori: ACD06193.1 Feature: domain Description: InsE Location: 167036-167357 bp Feature: domain Description: InsE Location: 1 67036-1 67357 bp Feature: gene Location: 167356-168246 bp Ori: ACD06231.1 Feature: domain Description: PHA02517 Location: 167419-168244 bp Feature: domain Description: PHA0251 7 Location: 1 6741 9-1 68244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), InsE (COG2963), PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), PHA02517 (putative transposase OrfB; Reviewed)