myRT

myRT report for GCA_000020365.1_ASM2036v1

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Seq: CP001087.1 Desulfobacterium autotrophicum HRM2, complete genome (5589073 bp)
Overview 1 RT 1: 2168693-2171766 bp 2 RT 2: 2998305-3009900 bp Neighborhood of RT #1 [2168693, 2171766] IHF_B TIR_2 RVT-Retrons HTH_XRE Neighborhood of RT #2 [2998305, 3009956] Peptidases_S8_Thermitase_like Big_7 Big_7 RVT-GII RVT-GII GIIM xerS INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII RVT-GII Peptidases_S8_Thermitase_like Big_7 Big_7 Big_7 Feature: gene Location: 2168693-2168923 bp Ori: ACN15016.1 Feature: domain Description: IHF_B Location: 2168699-2168909 bp Feature: domain Description: IHF_B Location: 21 68699-21 68909 bp Feature: gene Location: 2169084-2170262 bp Ori: ACN15017.1 Feature: domain Description: TIR_2 Location: 2169528-2169810 bp Feature: domain Description: TIR_2 Location: 21 69528-21 6981 0 bp Feature: gene Location: 2170273-2171157 bp Ori: ACN15018.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2170408-2170963 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 70408-21 70963 bp Feature: gene Location: 2171150-2171461 bp Ori: ACN15019.1 Feature: domain Description: HTH_XRE Location: 2171162-2171333 bp Feature: domain Description: HTH_XRE Location: 21 71 1 62-21 71 333 bp Feature: gene Location: 2171512-2171766 bp Feature: gene Location: 2998305-2999909 bp Ori: ACN15724.1 Feature: domain Description: Peptidases_S8_Thermitase_like Location: 2998479-2999256 bp Feature: domain Description: Peptidases_S8_Thermitase_like Location: 2998479-2999256 bp Feature: domain Description: Big_7 Location: 2999361-2999556 bp Feature: domain Description: Big_7 Location: 2999361 -2999556 bp Feature: domain Description: Big_7 Location: 2999658-2999853 bp Feature: domain Description: Big_7 Location: 2999658-2999853 bp Feature: gene Location: 2999861-3000235 bp Feature: gene Location: 3000453-3001124 bp Ori: ACN15726.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3000552-3000750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3000552-3000750 bp Feature: gene Location: 3001105-3001758 bp Ori: ACN15727.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3001108-3001372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3001 1 08-3001 372 bp Feature: domain Description: GIIM Note: maturase Location: 3001453-3001672 bp Feature: domain Description: GIIM Note: maturase Location: 3001 453-3001 672 bp Feature: gene Location: 3001915-3003144 bp Ori: ACN15728.1 Gene: xerC Feature: domain Description: xerS Location: 3002272-3002392 bp Feature: domain Description: xerS Location: 3002272-3002392 bp Feature: domain Description: INT_RitA_C_like Location: 3002584-3003118 bp Feature: domain Description: INT_RitA_C_like Location: 3002584-30031 1 8 bp Feature: gene Location: 3003111-3004127 bp Ori: ACN15729.1 Feature: domain Description: INT_RitB_C_like Location: 3003477-3004062 bp Feature: domain Description: INT_RitB_C_like Location: 3003477-3004062 bp Feature: gene Location: 3004114-3005127 bp Ori: ACN15730.1 Feature: domain Description: Phage_int_SAM_1 Location: 3004165-3004411 bp Feature: domain Description: Phage_int_SAM_1 Location: 30041 65-300441 1 bp Feature: domain Description: INT_RitC_C_like Location: 3004492-3005044 bp Feature: domain Description: INT_RitC_C_like Location: 3004492-3005044 bp Feature: gene Location: 3005863-3006603 bp Ori: ACN15731.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3006067-3006451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3006067-3006451 bp Feature: gene Location: 3006414-3007061 bp Ori: ACN15732.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3006630-3007017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3006630-300701 7 bp Feature: gene Location: 3007601-3007810 bp Feature: gene Location: 3007902-3009956 bp Ori: ACN15734.1 Feature: domain Description: Peptidases_S8_Thermitase_like Location: 3008235-3009012 bp Feature: domain Description: Peptidases_S8_Thermitase_like Location: 3008235-300901 2 bp Feature: domain Description: Big_7 Location: 3009117-3009312 bp Feature: domain Description: Big_7 Location: 30091 1 7-300931 2 bp Feature: domain Description: Big_7 Location: 3009408-3009603 bp Feature: domain Description: Big_7 Location: 3009408-3009603 bp Feature: domain Description: Big_7 Location: 3009699-3009900 bp Feature: domain Description: Big_7 Location: 3009699-3009900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IHF_B (cd13836), TIR_2 (pfam13676), RVT-Retrons, HTH_XRE (smart00530), Peptidases_S8_Thermitase_like (cd07484), Big_7 (pfam17957), RVT-GII, GIIM (pfam08388), xerS (PRK05084), INT_RitA_C_like (cd01188)
INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182)