myRT

myRT report for GCA_000020585.3_ASM2058v3

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Seq: CP001103.3 Alteromonas mediterranea DE chromosome, complete genome (4480937 bp)
Overview 1 RT 1: 433061-435546 bp 2 RT 2: 474911-479309 bp 3 RT 3: 1293015-1298008 bp 4 RT 4: 2964841-2971273 bp 5 RT 5: 3101214-3106675 bp 6 RT 6: 3862294-3869946 bp Neighborhood of RT #1 [433061, 435563] RVT-GII GIIM HAD_L2-DEX Neighborhood of RT #2 [474911, 479317] RVT-GII GIIM GT4_PimA-like RfaF Neighborhood of RT #3 [1293015, 1298008] ArgS RVT-GII GIIM SsuE Neighborhood of RT #4 [2964841, 2971299] PRK10856 PRK11194 RVT-GII GIIM ndk Neighborhood of RT #5 [3101214, 3106680] HTH_Tnp_1 HTH_Tnp_1 RVT-GII GIIM CirA Neighborhood of RT #6 [3862294, 3869975] sensory_box PRK10060 RVT-GII GIIM PRK12735 PRK13322 Feature: gene Location: 433061-433258 bp Feature: gene Location: 433497-433610 bp Feature: gene Location: 433919-434767 bp Ori: AEA96557.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433922-434330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433922-434330 bp Feature: domain Description: GIIM Note: maturase Location: 434375-434597 bp Feature: domain Description: GIIM Note: maturase Location: 434375-434597 bp Feature: gene Location: 434892-435563 bp Ori: AEA96558.1 Feature: domain Description: HAD_L2-DEX Location: 434904-435546 bp Feature: domain Description: HAD_L2-DEX Location: 434904-435546 bp Feature: gene Location: 474911-475108 bp Feature: gene Location: 475268-475465 bp Feature: gene Location: 475704-476975 bp Ori: AEA96613.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475917-476538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47591 7-476538 bp Feature: domain Description: GIIM Note: maturase Location: 476583-476805 bp Feature: domain Description: GIIM Note: maturase Location: 476583-476805 bp Feature: gene Location: 477118-478221 bp Ori: AEA96614.1 Feature: domain Description: GT4_PimA-like Location: 477163-478189 bp Feature: domain Description: GT4_PimA-like Location: 4771 63-4781 89 bp Feature: gene Location: 478238-479317 bp Ori: AEA96615.1 Feature: domain Description: RfaF Location: 478256-479309 bp Feature: domain Description: RfaF Location: 478256-479309 bp Feature: gene Location: 1293015-1294745 bp Ori: AEA97419.1 Feature: domain Description: ArgS Location: 1293018-1294743 bp Feature: domain Description: ArgS Location: 1 29301 8-1 294743 bp Feature: gene Location: 1295160-1295255 bp Feature: gene Location: 1295548-1296819 bp Ori: AEA97421.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1295761-1296382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 295761 -1 296382 bp Feature: domain Description: GIIM Note: maturase Location: 1296427-1296649 bp Feature: domain Description: GIIM Note: maturase Location: 1 296427-1 296649 bp Feature: gene Location: 1297026-1297592 bp Ori: AEA97422.1 Feature: domain Description: SsuE Location: 1297032-1297572 bp Feature: domain Description: SsuE Location: 1 297032-1 297572 bp Feature: gene Location: 1297805-1298008 bp Feature: gene Location: 2964841-2965893 bp Ori: AEA97188.1 Feature: domain Description: PRK10856 Location: 2964868-2965885 bp Feature: domain Description: PRK1 0856 Location: 2964868-2965885 bp Feature: gene Location: 2967259-2968377 bp Ori: AEA98707.1 Feature: domain Description: PRK11194 Location: 2967265-2968369 bp Feature: domain Description: PRK1 1 1 94 Location: 2967265-2968369 bp Feature: gene Location: 2968814-2970085 bp Ori: AGV54049.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2969027-2969648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2969027-2969648 bp Feature: domain Description: GIIM Note: maturase Location: 2969693-2969915 bp Feature: domain Description: GIIM Note: maturase Location: 2969693-296991 5 bp Feature: gene Location: 2970313-2970519 bp Feature: gene Location: 2970868-2971299 bp Ori: AEA98708.2 Feature: domain Description: ndk Location: 2970880-2971273 bp Feature: domain Description: ndk Location: 2970880-2971 273 bp Feature: gene Location: 3101214-3101705 bp Ori: AEA97616.1 Feature: domain Description: HTH_Tnp_1 Location: 3101220-3101358 bp Feature: domain Description: HTH_Tnp_1 Location: 31 01 220-31 01 358 bp Feature: domain Description: HTH_Tnp_1 Location: 3101382-3101613 bp Feature: domain Description: HTH_Tnp_1 Location: 31 01 382-31 01 61 3 bp Feature: gene Location: 3101823-3101990 bp Feature: gene Location: 3102084-3103355 bp Ori: AGV54060.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3102297-3102918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 02297-31 0291 8 bp Feature: domain Description: GIIM Note: maturase Location: 3102963-3103185 bp Feature: domain Description: GIIM Note: maturase Location: 31 02963-31 031 85 bp Feature: gene Location: 3103594-3103791 bp Feature: gene Location: 3104170-3106680 bp Ori: AEA97613.1 Feature: domain Description: CirA Location: 3104206-3106675 bp Feature: domain Description: CirA Location: 31 04206-31 06675 bp Feature: gene Location: 3862294-3864852 bp Ori: AGV54117.1 Feature: domain Description: sensory_box Location: 3862921-3863143 bp Feature: domain Description: sensory_box Location: 3862921 -38631 43 bp Feature: domain Description: PRK10060 Location: 3863182-3864814 bp Feature: domain Description: PRK1 0060 Location: 38631 82-386481 4 bp Feature: gene Location: 3865071-3865232 bp Feature: gene Location: 3865440-3866153 bp Ori: AGV54119.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3865449-3865716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3865449-386571 6 bp Feature: domain Description: GIIM Note: maturase Location: 3865761-3865983 bp Feature: domain Description: GIIM Note: maturase Location: 3865761 -3865983 bp Feature: gene Location: 3867497-3868681 bp Ori: AGV53904.1 Gene: tuf Feature: domain Description: PRK12735 Location: 3867500-3868676 bp Feature: domain Description: PRK1 2735 Location: 3867500-3868676 bp Feature: gene Location: 3869217-3869975 bp Ori: AEA99833.1 Feature: domain Description: PRK13322 Location: 3869244-3869946 bp Feature: domain Description: PRK1 3322 Location: 3869244-3869946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HAD_L2-DEX (cd02588), GT4_PimA-like (cd03801), RfaF (COG0859), ArgS (COG0018), SsuE (COG0431), PRK10856 (cytoskeleton protein RodZ), PRK11194 (ribosomal RNA large subunit methyltransferase N; Provisional), ndk (PRK00668)
HTH_Tnp_1 (pfam01527), CirA (COG1629), sensory_box (TIGR00229), PRK10060 (cyclic di-GMP phosphodiesterase), PRK12735 (elongation factor Tu; Reviewed), PRK13322 (pantothenate kinase; Reviewed)