myRT

myRT report for GCA_000020605.1_ASM2060v1

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Seq: CP001107.1 [Eubacterium] rectale ATCC 33656 chromosome, complete genome (3449685 bp)
Overview 1 RT 1: 730946-734322 bp 2 RT 2: 1467791-1471606 bp 3 RT 3: 1492595-1497959 bp 4 RT 4: 1948287-1952584 bp 5 RT 5: 2047988-2054435 bp 6 RT 6: 2182341-2184868 bp 7 RT 7: 2324292-2328635 bp 8 RT 8: 2403179-2415377 bp 9 RT 9: 2510802-2516342 bp 10 RT 10: 2550261-2557854 bp 11 RT 11: 2564408-2569080 bp 12 RT 12: 2728203-2733421 bp 13 RT 13: 3208838-3212151 bp 14 RT 14: 3235898-3239277 bp Neighborhood of RT #1 [730946, 734351] RVT_N RVT-GII GIIM VirD4 DUF3801 Neighborhood of RT #2 [1467791, 1471608] CysE RVT-GII GIIM FeoA Neighborhood of RT #3 [1492595, 1497961] DUF2225 RVT-GII GIIM PRK00509 argC Neighborhood of RT #4 [1948287, 1952584] RVT-DGRs Neighborhood of RT #5 [2047988, 2054449] type_IV_pilB SLC6sbd_Tyt1-Like RVT-GII GIIM fadh2 Neighborhood of RT #6 [2182341, 2184868] OmpR RVT-GII GIIM Neighborhood of RT #7 [2324292, 2328640] COG4189 RVT-GII GIIM TktA2 Neighborhood of RT #8 [2403179, 2415382] ThiM RVT-GII GIIM DapB PRK05813 TypA RVT-GII GIIM PRK07590 Neighborhood of RT #9 [2510802, 2516344] Acyl_transf_3 RVT-GII GIIM COG5263 CW_binding_1 CW_binding_1 CW_binding_1 CW_binding_1 ErfK Neighborhood of RT #10 [2550261, 2557874] spore_0_A HATPase_AgrC-ComD-like RVT-UG5 nitrilase XerD ddl Neighborhood of RT #11 [2564408, 2569080] DUF3801 VirD4 RVT_N RVT-GII GIIM Neighborhood of RT #12 [2728203, 2733426] mycofact_OYE_2 RVT-GII GIIM PRK12548 Neighborhood of RT #13 [3208838, 3212177] CsrA RVT-GII GIIM INT_C_like_3 Neighborhood of RT #14 [3235898, 3239277] RVT-GII GIIM Feature: gene Location: 730946-730986 bp Feature: gene Location: 729679-730870 bp Feature: gene Location: 730983-732647 bp Ori: ACR74592.1 Feature: domain Description: RVT_N Location: 731028-731271 bp Feature: domain Description: RVT_N Location: 731 028-731 271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 731316-731967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 731 31 6-731 967 bp Feature: domain Description: GIIM Note: maturase Location: 732018-732252 bp Feature: domain Description: GIIM Note: maturase Location: 73201 8-732252 bp Feature: gene Location: 733231-733884 bp Ori: ACR74593.1 Feature: domain Description: VirD4 Location: 733453-733876 bp Feature: domain Description: VirD4 Location: 733453-733876 bp Feature: gene Location: 733881-734351 bp Ori: ACR74594.1 Feature: domain Description: DUF3801 Location: 733959-734322 bp Feature: domain Description: DUF3801 Location: 733959-734322 bp Feature: gene Location: 1467791-1468747 bp Ori: ACR75321.1 Feature: domain Description: CysE Location: 1468157-1468649 bp Feature: domain Description: CysE Location: 1 4681 57-1 468649 bp Feature: gene Location: 1469048-1469290 bp Feature: gene Location: 1469398-1470792 bp Ori: ACR75323.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1469716-1470340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 46971 6-1 470340 bp Feature: domain Description: GIIM Note: maturase Location: 1470397-1470619 bp Feature: domain Description: GIIM Note: maturase Location: 1 470397-1 47061 9 bp Feature: gene Location: 1470997-1471299 bp Feature: gene Location: 1471396-1471608 bp Ori: ACR75325.1 Feature: domain Description: FeoA Location: 1471402-1471606 bp Feature: domain Description: FeoA Location: 1 471 402-1 471 606 bp Feature: gene Location: 1492595-1493452 bp Ori: ACR75348.1 Feature: domain Description: DUF2225 Location: 1492739-1493426 bp Feature: domain Description: DUF2225 Location: 1 492739-1 493426 bp Feature: gene Location: 1493571-1493813 bp Feature: gene Location: 1493921-1495315 bp Ori: ACR75350.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1494239-1494863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 494239-1 494863 bp Feature: domain Description: GIIM Note: maturase Location: 1494920-1495130 bp Feature: domain Description: GIIM Note: maturase Location: 1 494920-1 4951 30 bp Feature: gene Location: 1495403-1496629 bp Ori: ACR75351.1 Feature: domain Description: PRK00509 Location: 1495409-1496597 bp Feature: domain Description: PRK00509 Location: 1 495409-1 496597 bp Feature: gene Location: 1496837-1497961 bp Ori: ACR75352.1 Feature: domain Description: argC Location: 1496906-1497959 bp Feature: domain Description: argC Location: 1 496906-1 497959 bp Feature: gene Location: 1948287-1948577 bp Feature: gene Location: 1948693-1949052 bp Feature: gene Location: 1949018-1950274 bp Ori: ACR75826.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1949312-1949903 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 94931 2-1 949903 bp Feature: gene Location: 1950660-1952354 bp Feature: gene Location: 1952357-1952584 bp Feature: gene Location: 2047988-2049691 bp Ori: ACR75936.1 Feature: domain Description: type_IV_pilB Location: 2048018-2049680 bp Feature: domain Description: type_IV_pilB Location: 204801 8-2049680 bp Feature: gene Location: 2049791-2051188 bp Ori: ACR75937.1 Feature: domain Description: SLC6sbd_Tyt1-Like Location: 2049815-2051168 bp Feature: domain Description: SLC6sbd_Tyt1 -Like Location: 204981 5-2051 1 68 bp Feature: gene Location: 2051548-2052942 bp Ori: ACR75938.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2051866-2052490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2051 866-2052490 bp Feature: domain Description: GIIM Note: maturase Location: 2052547-2052769 bp Feature: domain Description: GIIM Note: maturase Location: 2052547-2052769 bp Feature: gene Location: 2053033-2053158 bp Feature: gene Location: 2053583-2054449 bp Ori: ACR75940.1 Feature: domain Description: fadh2 Location: 2053625-2054435 bp Feature: domain Description: fadh2 Location: 2053625-2054435 bp Feature: gene Location: 2182341-2182571 bp Ori: ACR76054.1 Feature: domain Description: OmpR Location: 2182362-2182554 bp Feature: domain Description: OmpR Location: 21 82362-21 82554 bp Feature: gene Location: 2182693-2182875 bp Feature: gene Location: 2182949-2184343 bp Ori: ACR76056.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2183267-2183891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 83267-21 83891 bp Feature: domain Description: GIIM Note: maturase Location: 2183948-2184170 bp Feature: domain Description: GIIM Note: maturase Location: 21 83948-21 841 70 bp Feature: gene Location: 2184434-2184559 bp Feature: gene Location: 2184650-2184868 bp Feature: gene Location: 2324292-2325227 bp Ori: ACR76186.1 Feature: domain Description: COG4189 Location: 2324319-2325195 bp Feature: domain Description: COG41 89 Location: 232431 9-23251 95 bp Feature: gene Location: 2325284-2325526 bp Feature: gene Location: 2325762-2327156 bp Ori: ACR76188.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2326080-2326704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2326080-2326704 bp Feature: domain Description: GIIM Note: maturase Location: 2326761-2326971 bp Feature: domain Description: GIIM Note: maturase Location: 2326761 -2326971 bp Feature: gene Location: 2327264-2327506 bp Feature: gene Location: 2327702-2328640 bp Ori: ACR76190.1 Feature: domain Description: TktA2 Location: 2327717-2328635 bp Feature: domain Description: TktA2 Location: 232771 7-2328635 bp Feature: gene Location: 2403179-2404054 bp Ori: ACR76261.1 Feature: domain Description: ThiM Location: 2403206-2404028 bp Feature: domain Description: ThiM Location: 2403206-2404028 bp Feature: gene Location: 2404317-2404442 bp Feature: gene Location: 2404684-2406078 bp Ori: ACR76263.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2405002-2405626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2405002-2405626 bp Feature: domain Description: GIIM Note: maturase Location: 2405683-2405905 bp Feature: domain Description: GIIM Note: maturase Location: 2405683-2405905 bp Feature: gene Location: 2406169-2406294 bp Feature: gene Location: 2406731-2407492 bp Ori: ACR76265.1 Feature: domain Description: DapB Location: 2406734-2407481 bp Feature: domain Description: DapB Location: 2406734-2407481 bp Feature: gene Location: 2409466-2410086 bp Ori: ACR76268.1 Feature: domain Description: PRK05813 Location: 2409469-2410081 bp Feature: domain Description: PRK0581 3 Location: 2409469-241 0081 bp Feature: gene Location: 2410297-2412129 bp Ori: ACR76269.1 Feature: domain Description: TypA Location: 2410315-2412112 bp Feature: domain Description: TypA Location: 241 031 5-241 21 1 2 bp Feature: gene Location: 2412270-2413664 bp Ori: ACR76270.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2412588-2413212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 2588-241 321 2 bp Feature: domain Description: GIIM Note: maturase Location: 2413269-2413479 bp Feature: domain Description: GIIM Note: maturase Location: 241 3269-241 3479 bp Feature: gene Location: 2413772-2414014 bp Feature: gene Location: 2414168-2415382 bp Ori: ACR76272.1 Feature: domain Description: PRK07590 Location: 2414171-2415377 bp Feature: domain Description: PRK07590 Location: 241 41 71 -241 5377 bp Feature: gene Location: 2510802-2511953 bp Feature: gene Location: 2511984-2513024 bp Ori: ACR76363.1 Feature: domain Description: Acyl_transf_3 Location: 2512011-2512923 bp Feature: domain Description: Acyl_transf_3 Location: 251 201 1 -251 2923 bp Feature: gene Location: 2513131-2514525 bp Ori: ACR76364.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2513449-2514073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 3449-251 4073 bp Feature: domain Description: GIIM Note: maturase Location: 2514130-2514352 bp Feature: domain Description: GIIM Note: maturase Location: 251 41 30-251 4352 bp Feature: gene Location: 2514616-2514741 bp Feature: gene Location: 2515022-2516344 bp Ori: ACR76366.1 Feature: domain Description: COG5263 Location: 2515148-2515601 bp Feature: domain Description: COG5263 Location: 251 51 48-251 5601 bp Feature: domain Description: CW_binding_1 Location: 2515610-2515661 bp Feature: domain Description: CW_binding_1 Location: 251 561 0-251 5661 bp Feature: domain Description: CW_binding_1 Location: 2515667-2515727 bp Feature: domain Description: CW_binding_1 Location: 251 5667-251 5727 bp Feature: domain Description: CW_binding_1 Location: 2515736-2515772 bp Feature: domain Description: CW_binding_1 Location: 251 5736-251 5772 bp Feature: domain Description: CW_binding_1 Location: 2515799-2515835 bp Feature: domain Description: CW_binding_1 Location: 251 5799-251 5835 bp Feature: domain Description: ErfK Location: 2515976-2516342 bp Feature: domain Description: ErfK Location: 251 5976-251 6342 bp Feature: gene Location: 2550261-2551049 bp Ori: ACR76405.1 Feature: domain Description: spore_0_A Location: 2550282-2551041 bp Feature: domain Description: spore_0_A Location: 2550282-2551 041 bp Feature: gene Location: 2551605-2552705 bp Ori: ACR76406.1 Feature: domain Description: HATPase_AgrC-ComD-like Location: 2552151-2552550 bp Feature: domain Description: HATPase_AgrC-ComD-like Location: 25521 51 -2552550 bp Feature: gene Location: 2552723-2555734 bp Ori: ACR76407.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2553239-2553710 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2553239-255371 0 bp Feature: domain Description: nitrilase Location: 2554979-2555660 bp Feature: domain Description: nitrilase Location: 2554979-2555660 bp Feature: gene Location: 2555841-2556761 bp Ori: ACR76408.1 Feature: domain Description: XerD Location: 2555850-2556744 bp Feature: domain Description: XerD Location: 2555850-2556744 bp Feature: gene Location: 2556876-2557874 bp Ori: ACR76409.1 Feature: domain Description: ddl Location: 2556984-2557854 bp Feature: domain Description: ddl Location: 2556984-2557854 bp Feature: gene Location: 2564408-2564878 bp Ori: ACR76417.1 Feature: domain Description: DUF3801 Location: 2564486-2564849 bp Feature: domain Description: DUF3801 Location: 2564486-2564849 bp Feature: gene Location: 2564875-2565528 bp Ori: ACR76418.1 Feature: domain Description: VirD4 Location: 2565097-2565520 bp Feature: domain Description: VirD4 Location: 2565097-2565520 bp Feature: gene Location: 2566112-2567776 bp Ori: ACR76419.1 Feature: domain Description: RVT_N Location: 2566157-2566400 bp Feature: domain Description: RVT_N Location: 25661 57-2566400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2566445-2567096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2566445-2567096 bp Feature: domain Description: GIIM Note: maturase Location: 2567147-2567381 bp Feature: domain Description: GIIM Note: maturase Location: 25671 47-2567381 bp Feature: gene Location: 2567773-2567813 bp Feature: gene Location: 2567889-2569080 bp Feature: gene Location: 2728203-2728412 bp Feature: gene Location: 2728518-2730518 bp Ori: ACR76576.1 Feature: domain Description: mycofact_OYE_2 Location: 2728539-2730486 bp Feature: domain Description: mycofact_OYE_2 Location: 2728539-2730486 bp Feature: gene Location: 2730619-2732013 bp Ori: ACR76577.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2730937-2731561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2730937-2731 561 bp Feature: domain Description: GIIM Note: maturase Location: 2731618-2731840 bp Feature: domain Description: GIIM Note: maturase Location: 2731 61 8-2731 840 bp Feature: gene Location: 2732104-2732229 bp Feature: gene Location: 2732557-2733426 bp Ori: ACR76579.1 Feature: domain Description: PRK12548 Location: 2732560-2733421 bp Feature: domain Description: PRK1 2548 Location: 2732560-2733421 bp Feature: gene Location: 3208838-3208963 bp Feature: gene Location: 3208969-3209238 bp Ori: ACR77124.1 Feature: domain Description: CsrA Location: 3208972-3209104 bp Feature: domain Description: CsrA Location: 3208972-32091 04 bp Feature: gene Location: 3209613-3211007 bp Ori: ACR77125.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3209931-3210555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3209931 -321 0555 bp Feature: domain Description: GIIM Note: maturase Location: 3210612-3210822 bp Feature: domain Description: GIIM Note: maturase Location: 321 061 2-321 0822 bp Feature: gene Location: 3211115-3211357 bp Feature: gene Location: 3211599-3212177 bp Ori: ACR77127.1 Feature: domain Description: INT_C_like_3 Location: 3211611-3212151 bp Feature: domain Description: INT_C_like_3 Location: 321 1 61 1 -321 21 51 bp Feature: gene Location: 3235898-3236515 bp Feature: gene Location: 3235990-3236274 bp Feature: gene Location: 3236841-3238235 bp Ori: ACR77165.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3237159-3237783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32371 59-3237783 bp Feature: domain Description: GIIM Note: maturase Location: 3237840-3238062 bp Feature: domain Description: GIIM Note: maturase Location: 3237840-3238062 bp Feature: gene Location: 3238326-3238451 bp Feature: gene Location: 3239053-3239277 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VirD4 (COG3505), DUF3801 (pfam12687), CysE (COG1045), FeoA (smart00899), DUF2225 (pfam09986), PRK00509 (argininosuccinate synthase; Provisional), argC (TIGR01850)
RVT-DGRs, type_IV_pilB (TIGR02538), SLC6sbd_Tyt1-Like (cd10336), fadh2 (TIGR00676), OmpR (COG0745), COG4189 (Predicted transcriptional regulator ), TktA2 (COG3958), ThiM (COG2145), DapB (COG0289), PRK05813 (single-stranded DNA-binding protein; Provisional)
TypA (COG1217), PRK07590 (L,L-diaminopimelate aminotransferase; Validated), Acyl_transf_3 (pfam01757), COG5263 (Glucan-binding domain (YG repeat) ), CW_binding_1 (pfam01473), ErfK (COG1376), spore_0_A (TIGR02875), HATPase_AgrC-ComD-like (cd16935), RVT-UG5, nitrilase (cl11424)
XerD (COG4974), ddl (PRK01966), mycofact_OYE_2 (TIGR03997), PRK12548 (shikimate dehydrogenase), CsrA (pfam02599), INT_C_like_3 (cd01192)