myRT

myRT report for GCA_000020625.1_ASM2062v1

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Seq: CP001109.1 Prosthecochloris aestuarii DSM 271 plasmid pPAES01, complete sequence (66772 bp)
Overview 1 RT 1: 44168-47519 bp Neighborhood of RT #1 [44168, 47551] YfmG RVT-DGRs Avd_like HRDC Feature: gene Location: 44168-44959 bp Ori: ACF47375.1 Feature: domain Description: YfmG Location: 44237-44954 bp Feature: domain Description: YfmG Location: 44237-44954 bp Feature: gene Location: 45121-45417 bp Feature: gene Location: 45728-46741 bp Ori: ACF47377.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45926-46595 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45926-46595 bp Feature: gene Location: 46738-47100 bp Ori: ACF47378.1 Feature: domain Description: Avd_like Location: 46786-47092 bp Feature: domain Description: Avd_like Location: 46786-47092 bp Feature: gene Location: 47072-47551 bp Ori: ACF47379.1 Feature: domain Description: HRDC Location: 47324-47519 bp Feature: domain Description: HRDC Location: 47324-4751 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376), HRDC (smart00341)

Seq: CP001108.1 Prosthecochloris aestuarii DSM 271, complete genome (2512923 bp)
Overview 1 RT 1: 85416-88496 bp 2 RT 2: 669917-674893 bp 3 RT 3: 686775-693702 bp 4 RT 4: 1208193-1212033 bp 5 RT 5: 2283234-2290574 bp Neighborhood of RT #1 [85416, 88496] YafK RVT-GII YkuD_like Neighborhood of RT #2 [669917, 674904] Peptidase_S26 RVT-GII GIIM DUF3363 Neighborhood of RT #3 [686775, 694028] HTH_23 PHA02517 HTH_Tnp_1 RVT_N RVT-GII GIIM pepN_strep_liv DUF1648 Neighborhood of RT #4 [1208193, 1212068] HTH_32 rve RVT_N RVT-GII GIIM rve_3 PinE Neighborhood of RT #5 [2283234, 2290645] SkfB Tra5 RVT-GII GIIM HTH_Tnp_1 YjgR YjgR Feature: gene Location: 85416-85784 bp Ori: ACF45144.1 Feature: domain Description: YafK Location: 85536-85758 bp Feature: domain Description: YafK Location: 85536-85758 bp Feature: gene Location: 85860-85976 bp Feature: gene Location: 86113-87594 bp Ori: ACF45146.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86524-87214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8652 4-872 14 bp Feature: gene Location: 87602-87883 bp Ori: ACF45147.1 Feature: domain Description: YkuD_like Location: 87692-87878 bp Feature: domain Description: YkuD_like Location: 87692 -87878 bp Feature: gene Location: 88032-88496 bp Feature: gene Location: 669917-670357 bp Feature: gene Location: 670345-671007 bp Ori: ACF45683.1 Feature: domain Description: Peptidase_S26 Location: 670444-670819 bp Feature: domain Description: Peptidase_S2 6 Location: 670444-670819 bp Feature: gene Location: 670904-672139 bp Ori: ACF45684.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671108-671765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671108-671765 bp Feature: domain Description: GIIM Note: maturase Location: 671846-672065 bp Feature: domain Description: GIIM Note: maturase Location: 671846-672 065 bp Feature: gene Location: 672562-672819 bp Feature: gene Location: 672973-674904 bp Ori: ACF45686.1 Feature: domain Description: DUF3363 Location: 673762-674893 bp Feature: domain Description: DUF3363 Location: 673762 -674893 bp Feature: gene Location: 686775-687758 bp Ori: ACF45700.1 Feature: domain Description: HTH_23 Location: 686796-686874 bp Feature: domain Description: HTH_2 3 Location: 686796-686874 bp Feature: domain Description: PHA02517 Location: 686883-687612 bp Feature: domain Description: PHA02 517 Location: 686883-687612 bp Feature: gene Location: 687788-688273 bp Ori: ACF45701.1 Feature: domain Description: HTH_Tnp_1 Location: 687797-687941 bp Feature: domain Description: HTH_Tnp_1 Location: 687797-687941 bp Feature: gene Location: 688908-690380 bp Ori: ACF45702.1 Feature: domain Description: RVT_N Location: 688953-689196 bp Feature: domain Description: RVT_N Location: 688953-689196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 689241-689877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6892 41-689877 bp Feature: domain Description: GIIM Note: maturase Location: 689928-690162 bp Feature: domain Description: GIIM Note: maturase Location: 68992 8-690162 bp Feature: gene Location: 690823-693384 bp Ori: ACF45703.1 Feature: domain Description: pepN_strep_liv Location: 690856-693346 bp Feature: domain Description: pepN_strep_liv Location: 690856-693346 bp Feature: gene Location: 693516-694028 bp Ori: ACF45704.1 Feature: domain Description: DUF1648 Location: 693564-693702 bp Feature: domain Description: DUF1648 Location: 693564-693702 bp Feature: gene Location: 1208193-1208972 bp Ori: ACF46133.1 Feature: domain Description: HTH_32 Location: 1208265-1208481 bp Feature: domain Description: HTH_32 Location: 12 082 65-12 08481 bp Feature: domain Description: rve Location: 1208562-1208883 bp Feature: domain Description: rve Location: 12 08562 -12 08883 bp Feature: gene Location: 1209022-1209216 bp Feature: gene Location: 1209470-1210957 bp Ori: ACF46135.1 Feature: domain Description: RVT_N Location: 1209515-1209758 bp Feature: domain Description: RVT_N Location: 12 09515-12 09758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1209803-1210439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 09803-12 10439 bp Feature: domain Description: GIIM Note: maturase Location: 1210490-1210724 bp Feature: domain Description: GIIM Note: maturase Location: 12 10490-12 1072 4 bp Feature: gene Location: 1211052-1211333 bp Ori: ACF46136.1 Feature: domain Description: rve_3 Location: 1211055-1211178 bp Feature: domain Description: rve_3 Location: 12 11055-12 11178 bp Feature: gene Location: 1211478-1212068 bp Ori: ACF46137.1 Feature: domain Description: PinE Location: 1211481-1212033 bp Feature: domain Description: PinE Location: 12 11481-12 12 033 bp Feature: gene Location: 2283234-2284880 bp Ori: ACF47110.1 Feature: domain Description: SkfB Location: 2283945-2284824 bp Feature: domain Description: SkfB Location: 2 2 83945-2 2 8482 4 bp Feature: gene Location: 2285205-2285648 bp Ori: ACF47111.1 Feature: domain Description: Tra5 Location: 2285211-2285592 bp Feature: domain Description: Tra5 Location: 2 2 852 11-2 2 85592 bp Feature: gene Location: 2285752-2286993 bp Ori: ACF47112.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2285950-2286607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 85950-2 2 86607 bp Feature: domain Description: GIIM Note: maturase Location: 2286685-2286907 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 86685-2 2 86907 bp Feature: gene Location: 2287902-2288192 bp Ori: ACF47113.1 Feature: domain Description: HTH_Tnp_1 Location: 2287911-2288130 bp Feature: domain Description: HTH_Tnp_1 Location: 2 2 87911-2 2 88130 bp Feature: gene Location: 2288579-2290645 bp Ori: ACF47114.1 Feature: domain Description: YjgR Location: 2289821-2289998 bp Feature: domain Description: YjgR Location: 2 2 8982 1-2 2 89998 bp Feature: domain Description: YjgR Location: 2290277-2290574 bp Feature: domain Description: YjgR Location: 2 2 902 77-2 2 90574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YafK (COG3034), RVT-GII, YkuD_like (cl21614), Peptidase_S26 (pfam10502), GIIM (pfam08388), DUF3363 (pfam11843), HTH_23 (pfam13384), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527), RVT_N (pfam13655)
pepN_strep_liv (TIGR02412), DUF1648 (pfam07853), HTH_32 (pfam13565), rve (pfam00665), rve_3 (pfam13683), PinE (COG1961), SkfB (COG0535), Tra5 (COG2801), YjgR (COG0433)