myRT

myRT report for GCA_000020645.1_ASM2064v1

Download annotations/find similar RTs

Seq: CP001110.1 Pelodictyon phaeoclathratiforme BU-1, complete genome (3018238 bp)
Overview 1 RT 1: 395853-400279 bp 2 RT 2: 1000124-1005911 bp 3 RT 3: 1104920-1110399 bp 4 RT 4: 1302471-1309094 bp 5 RT 5: 2193965-2199772 bp 6 RT 6: 2268073-2277959 bp 7 RT 7: 2414473-2422721 bp 8 RT 8: 2540778-2543970 bp Neighborhood of RT #1 [395853, 400279] IspA PRK05437 RVT-GII GIIM Neighborhood of RT #2 [1000124, 1005946] GYF_2 RVT-GII GIIM zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 Neighborhood of RT #3 [1104920, 1110851] DDE_3 yhaH RVT-GII GIIM STKc_PknB_like RskA DUF1566 STKc_PknB_like Neighborhood of RT #4 [1302471, 1309135] COG3943 zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII GIIM Bro-N FIDO DUF4351 Neighborhood of RT #5 [2193965, 2200104] DUF45 Cys_Met_Meta_PP RVT-GII GIIM Methyltransf_25 Neighborhood of RT #6 [2268073, 2277976] COG5635 pfam03781 PhdYeFM_antitox RVT-DGRs Avd_like COG5635 pfam03781 Neighborhood of RT #7 [2414473, 2422732] MPP_1 TIR_2 YfmG Unstab_antitox RVT-DGRs HRDC MPP_1 COG5635 pfam03781 Neighborhood of RT #8 [2540778, 2544008] Csx15_I-U Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Feature: gene Location: 395853-396866 bp Ori: ACF42741.1 Feature: domain Description: IspA Location: 395913-396861 bp Feature: domain Description: IspA Location: 39591 3-396861 bp Feature: gene Location: 396863-397936 bp Ori: ACF42742.1 Feature: domain Description: PRK05437 Location: 396881-397928 bp Feature: domain Description: PRK05437 Location: 396881 -397928 bp Feature: gene Location: 398658-399899 bp Ori: ACF42743.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398856-399513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398856-39951 3 bp Feature: domain Description: GIIM Note: maturase Location: 399594-399813 bp Feature: domain Description: GIIM Note: maturase Location: 399594-39981 3 bp Feature: gene Location: 399896-400279 bp Feature: gene Location: 1000124-1000705 bp Ori: ACF43248.1 Feature: domain Description: GYF_2 Location: 1000166-1000301 bp Feature: domain Description: GYF_2 Location: 1 0001 66-1 000301 bp Feature: gene Location: 1000860-1001543 bp Feature: gene Location: 1002435-1003676 bp Ori: ACF43250.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1002633-1003290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 002633-1 003290 bp Feature: domain Description: GIIM Note: maturase Location: 1003371-1003590 bp Feature: domain Description: GIIM Note: maturase Location: 1 003371 -1 003590 bp Feature: gene Location: 1004312-1004518 bp Feature: gene Location: 1004726-1005946 bp Ori: ACF43252.1 Feature: domain Description: zf-ISL3 Location: 1004855-1004987 bp Feature: domain Description: zf-ISL3 Location: 1 004855-1 004987 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1005005-1005155 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1 005005-1 0051 55 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1005200-1005911 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 005200-1 00591 1 bp Feature: gene Location: 1104920-1105426 bp Ori: ACF43354.1 Feature: domain Description: DDE_3 Location: 1104926-1105322 bp Feature: domain Description: DDE_3 Location: 1 1 04926-1 1 05322 bp Feature: gene Location: 1105475-1106140 bp Ori: ACF43355.1 Feature: domain Description: yhaH Location: 1105685-1106042 bp Feature: domain Description: yhaH Location: 1 1 05685-1 1 06042 bp Feature: gene Location: 1106646-1107887 bp Ori: ACF43356.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1106844-1107501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 06844-1 1 07501 bp Feature: domain Description: GIIM Note: maturase Location: 1107582-1107801 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 07582-1 1 07801 bp Feature: gene Location: 1108042-1109553 bp Ori: ACF43357.1 Feature: domain Description: STKc_PknB_like Location: 1108063-1108855 bp Feature: domain Description: STKc_PknB_like Location: 1 1 08063-1 1 08855 bp Feature: domain Description: RskA Location: 1108906-1109140 bp Feature: domain Description: RskA Location: 1 1 08906-1 1 091 40 bp Feature: domain Description: DUF1566 Location: 1109287-1109545 bp Feature: domain Description: DUF1 566 Location: 1 1 09287-1 1 09545 bp Feature: gene Location: 1109592-1110851 bp Ori: ACF43358.1 Feature: domain Description: STKc_PknB_like Location: 1109613-1110399 bp Feature: domain Description: STKc_PknB_like Location: 1 1 0961 3-1 1 1 0399 bp Feature: gene Location: 1302471-1303532 bp Ori: ACF43514.1 Feature: domain Description: COG3943 Location: 1302534-1303506 bp Feature: domain Description: COG3943 Location: 1 302534-1 303506 bp Feature: gene Location: 1303762-1304847 bp Ori: ACF43515.1 Feature: domain Description: zf-ISL3 Location: 1303891-1304023 bp Feature: domain Description: zf-ISL3 Location: 1 303891 -1 304023 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1304041-1304191 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1 304041 -1 3041 91 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1304236-1304839 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 304236-1 304839 bp Feature: gene Location: 1305353-1306594 bp Ori: ACF43516.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1305551-1306208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 305551 -1 306208 bp Feature: domain Description: GIIM Note: maturase Location: 1306289-1306508 bp Feature: domain Description: GIIM Note: maturase Location: 1 306289-1 306508 bp Feature: gene Location: 1307021-1307902 bp Ori: ACF43517.1 Feature: domain Description: Bro-N Location: 1307066-1307357 bp Feature: domain Description: Bro-N Location: 1 307066-1 307357 bp Feature: domain Description: FIDO Location: 1307393-1307894 bp Feature: domain Description: FIDO Location: 1 307393-1 307894 bp Feature: gene Location: 1308125-1309135 bp Ori: ACF43518.1 Feature: domain Description: DUF4351 Location: 1308953-1309094 bp Feature: domain Description: DUF4351 Location: 1 308953-1 309094 bp Feature: gene Location: 2193965-2194714 bp Ori: ACF44316.1 Feature: domain Description: DUF45 Location: 2194040-2194670 bp Feature: domain Description: DUF45 Location: 21 94040-21 94670 bp Feature: gene Location: 2194770-2195906 bp Ori: ACF44317.1 Feature: domain Description: Cys_Met_Meta_PP Location: 2194785-2195901 bp Feature: domain Description: Cys_Met_Meta_PP Location: 21 94785-21 95901 bp Feature: gene Location: 2196461-2197702 bp Ori: ACF44318.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2196659-2197316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 96659-21 9731 6 bp Feature: domain Description: GIIM Note: maturase Location: 2197397-2197616 bp Feature: domain Description: GIIM Note: maturase Location: 21 97397-21 9761 6 bp Feature: gene Location: 2197699-2198082 bp Feature: gene Location: 2199391-2200104 bp Ori: ACF44320.1 Feature: domain Description: Methyltransf_25 Location: 2199499-2199772 bp Feature: domain Description: Methyltransf_25 Location: 21 99499-21 99772 bp Feature: gene Location: 2268073-2271096 bp Ori: ACF44387.1 Feature: domain Description: COG5635 Location: 2268907-2270176 bp Feature: domain Description: COG5635 Location: 2268907-22701 76 bp Feature: domain Description: pfam03781 Location: 2270341-2271079 bp Feature: domain Description: pfam03781 Location: 2270341 -2271 079 bp Feature: gene Location: 2272649-2272876 bp Ori: ACF44388.1 Feature: domain Description: PhdYeFM_antitox Location: 2272652-2272763 bp Feature: domain Description: PhdYeFM_antitox Location: 2272652-2272763 bp Feature: gene Location: 2273019-2274050 bp Ori: ACF44389.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2273229-2273868 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2273229-2273868 bp Feature: gene Location: 2274446-2274766 bp Ori: ACF44390.1 Feature: domain Description: Avd_like Location: 2274455-2274761 bp Feature: domain Description: Avd_like Location: 2274455-2274761 bp Feature: gene Location: 2274827-2277976 bp Ori: ACF44391.1 Feature: domain Description: COG5635 Location: 2275670-2276783 bp Feature: domain Description: COG5635 Location: 2275670-2276783 bp Feature: domain Description: pfam03781 Location: 2277203-2277959 bp Feature: domain Description: pfam03781 Location: 2277203-2277959 bp Feature: gene Location: 2414473-2416800 bp Ori: ACF44534.1 Feature: domain Description: MPP_1 Location: 2414491-2415217 bp Feature: domain Description: MPP_1 Location: 241 4491 -241 521 7 bp Feature: domain Description: TIR_2 Location: 2415475-2415871 bp Feature: domain Description: TIR_2 Location: 241 5475-241 5871 bp Feature: domain Description: YfmG Location: 2415949-2416789 bp Feature: domain Description: YfmG Location: 241 5949-241 6789 bp Feature: gene Location: 2416977-2417201 bp Ori: ACF44535.1 Feature: domain Description: Unstab_antitox Location: 2417028-2417178 bp Feature: domain Description: Unstab_antitox Location: 241 7028-241 71 78 bp Feature: gene Location: 2417486-2418520 bp Ori: ACF44536.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2417696-2418278 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 241 7696-241 8278 bp Feature: gene Location: 2418495-2418956 bp Ori: ACF44537.1 Feature: domain Description: HRDC Location: 2418735-2418918 bp Feature: domain Description: HRDC Location: 241 8735-241 891 8 bp Feature: gene Location: 2419160-2422732 bp Ori: ACF44538.1 Feature: domain Description: MPP_1 Location: 2419178-2419937 bp Feature: domain Description: MPP_1 Location: 241 91 78-241 9937 bp Feature: domain Description: COG5635 Location: 2420435-2421617 bp Feature: domain Description: COG5635 Location: 2420435-2421 61 7 bp Feature: domain Description: pfam03781 Location: 2421998-2422721 bp Feature: domain Description: pfam03781 Location: 2421 998-2422721 bp Feature: gene Location: 2540778-2541350 bp Ori: ACF44641.1 Feature: domain Description: Csx15_I-U Location: 2541048-2541348 bp Feature: domain Description: Csx1 5_I-U Location: 2541 048-2541 348 bp Feature: gene Location: 2541387-2541671 bp Ori: ACF44642.1 Feature: domain Description: Cas2_I_II_III Location: 2541399-2541633 bp Feature: domain Description: Cas2_I_II_III Location: 2541 399-2541 633 bp Feature: gene Location: 2541825-2544008 bp Ori: ACF44643.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2542035-2542641 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2542035-2542641 bp Feature: domain Description: Cas1_I-II-III Location: 2542983-2543970 bp Feature: domain Description: Cas1 _I-II-III Location: 2542983-2543970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IspA (pfam04279), PRK05437 (isopentenyl pyrophosphate isomerase; Provisional), RVT-GII, GIIM (pfam08388), GYF_2, zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), DDE_3 (pfam13358), yhaH (COG3152)
STKc_PknB_like (cd14014), RskA (pfam10099), DUF1566 (pfam07603), COG3943 (Uncharacterized conserved protein ), Bro-N (smart01040), FIDO (COG2184), DUF4351 (pfam14261), DUF45 (pfam01863), Cys_Met_Meta_PP (pfam01053), Methyltransf_25 (pfam13649)
COG5635 (Predicted NTPase, NACHT family domain ), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), PhdYeFM_antitox (pfam02604), RVT-DGRs, Avd_like (cd16376), MPP_1 (cd07400), TIR_2 (pfam13676), YfmG (COG1262), Unstab_antitox (pfam09720), HRDC (smart00341)
Csx15_I-U (cd09766), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656)