myRT

myRT report for GCA_000021225.1_ASM2122v1

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Seq: CP001179.1 Bacillus cereus AH187 plasmid pAH187_270, complete sequence (270082 bp)
Overview 1 RT 1: 19437-23831 bp 2 RT 2: 29658-37296 bp 3 RT 3: 91560-100349 bp 4 RT 4: 222903-226713 bp Neighborhood of RT #1 [19437, 23831] beta_clamp RVT-GII Neighborhood of RT #2 [29658, 37296] nuc_hydro RVT_N RVT-GII GIIM TraG-D_C Ftsk_gamma Ftsk_gamma Neighborhood of RT #3 [91560, 100349] TraC-F-type RVT-GII HNHc TraC-F-type Neighborhood of RT #4 [222903, 226713] MTS RVT-GII HNHc Feature: gene Location: 19437-20549 bp Ori: ACJ82654.1 Gene: dnaN Feature: domain Description: beta_clamp Location: 19440-20544 bp Feature: domain Description: beta_clamp Location: 1 9440-20544 bp Feature: gene Location: 20630-21157 bp Feature: gene Location: 21235-23133 bp Ori: ACJ82779.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21550-22252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 550-22252 bp Feature: gene Location: 23331-23471 bp Feature: gene Location: 23616-23831 bp Feature: gene Location: 29658-29771 bp Feature: gene Location: 29863-30813 bp Ori: ACJ82632.1 Feature: domain Description: nuc_hydro Location: 29878-30784 bp Feature: domain Description: nuc_hydro Location: 29878-30784 bp Feature: gene Location: 31533-33179 bp Ori: ACJ82735.1 Feature: domain Description: RVT_N Location: 31575-31812 bp Feature: domain Description: RVT_N Location: 31 575-31 81 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31866-32526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 866-32526 bp Feature: domain Description: GIIM Note: maturase Location: 32595-32826 bp Feature: domain Description: GIIM Note: maturase Location: 32595-32826 bp Feature: gene Location: 33392-36892 bp Ori: ACJ82799.1 Feature: domain Description: TraG-D_C Location: 35009-35369 bp Feature: domain Description: TraG-D_C Location: 35009-35369 bp Feature: domain Description: Ftsk_gamma Location: 35777-35954 bp Feature: domain Description: Ftsk_gamma Location: 35777-35954 bp Feature: domain Description: Ftsk_gamma Location: 36086-36221 bp Feature: domain Description: Ftsk_gamma Location: 36086-36221 bp Feature: gene Location: 36910-37296 bp Feature: gene Location: 91560-92531 bp Ori: ACJ82697.1 Feature: domain Description: TraC-F-type Location: 91980-92454 bp Feature: domain Description: TraC-F-type Location: 91 980-92454 bp Feature: gene Location: 92732-92854 bp Feature: gene Location: 93247-95079 bp Ori: ACJ82854.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93547-94252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93547-94252 bp Feature: domain Description: HNHc Note: nucleases Location: 94831-94963 bp Feature: domain Description: HNHc Note: nucleases Location: 94831 -94963 bp Feature: gene Location: 95370-96338 bp Ori: ACJ82673.1 Feature: domain Description: TraC-F-type Location: 95397-96177 bp Feature: domain Description: TraC-F-type Location: 95397-961 77 bp Feature: gene Location: 96369-100349 bp Feature: gene Location: 222903-223130 bp Feature: gene Location: 223146-224267 bp Ori: ACJ82853.1 Feature: domain Description: MTS Location: 223242-223605 bp Feature: domain Description: MTS Location: 223242-223605 bp Feature: gene Location: 224412-226340 bp Ori: ACJ82776.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224733-225468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224733-225468 bp Feature: domain Description: HNHc Note: nucleases Location: 226059-226224 bp Feature: domain Description: HNHc Note: nucleases Location: 226059-226224 bp Feature: gene Location: 226424-226537 bp Feature: gene Location: 226597-226713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT beta_clamp (cl29549), RVT-GII, nuc_hydro (cl00226), RVT_N (pfam13655), GIIM (pfam08388), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), TraC-F-type (TIGR02746), HNHc (smart00507), MTS (pfam05175)

Seq: CP001177.1 Bacillus cereus AH187, complete genome (5269030 bp)
Overview 1 RT 1: 942347-947659 bp 2 RT 2: 981040-989054 bp 3 RT 3: 1736992-1743148 bp 4 RT 4: 3117428-3123889 bp 5 RT 5: 3189445-3196173 bp 6 RT 6: 3444468-3453939 bp 7 RT 7: 3786695-3791861 bp 8 RT 8: 3878188-3885454 bp Neighborhood of RT #1 [942347, 947659] YdiL PRK12856 RVT-GII HNHc TTHA1623-like_MBL-fold Neighborhood of RT #2 [981040, 989054] PRK06187 Big_8 RVT-GII HNHc Collagen_bind SpaA CollagenBindB COG4932 Neighborhood of RT #3 [1736992, 1743153] PP2C_2 asn_synth_AEB RVT-GII HNHc AsnB PRK06811 Neighborhood of RT #4 [3117428, 3123897] Hydrolase_4 HTH_3 TPR RVT_N RVT-GII GIIM GrpB YbaK_EbsC Neighborhood of RT #5 [3189445, 3196190] PRK02487 stp RVT_N RVT-GII GIIM IDEAL IscR Neighborhood of RT #6 [3444468, 3454235] B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat B_ant_repeat RVT-GII HNHc B_ant_repeat Neighborhood of RT #7 [3786695, 3791917] YugN amiF RVT-GII HNHc amiF caa3_CtaG Neighborhood of RT #8 [3878188, 3885462] mtnA mtnK RVT-GII HNHc nitrilase_5 PRK08068 Feature: gene Location: 942347-942997 bp Ori: ACJ78812.1 Feature: domain Description: YdiL Location: 942380-942983 bp Feature: domain Description: YdiL Location: 942 380-942 983 bp Feature: gene Location: 943060-943371 bp Ori: ACJ79270.1 Feature: domain Description: PRK12856 Location: 943063-943369 bp Feature: domain Description: PRK12 856 Location: 943063-943369 bp Feature: gene Location: 944591-946423 bp Ori: ACJ81048.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 944891-945596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 944891-945596 bp Feature: domain Description: HNHc Note: nucleases Location: 946175-946307 bp Feature: domain Description: HNHc Note: nucleases Location: 946175-946307 bp Feature: gene Location: 946663-947076 bp Ori: ACJ79066.1 Feature: domain Description: TTHA1623-like_MBL-fold Location: 946666-947062 bp Feature: domain Description: TTHA162 3-like_MBL-fold Location: 946666-947062 bp Feature: gene Location: 947525-947659 bp Feature: gene Location: 981040-982596 bp Ori: ACJ80654.1 Feature: domain Description: PRK06187 Location: 981043-982585 bp Feature: domain Description: PRK06187 Location: 981043-982 585 bp Feature: gene Location: 983210-983722 bp Ori: ACJ81673.1 Feature: domain Description: Big_8 Location: 983360-983609 bp Feature: domain Description: Big_8 Location: 983360-983609 bp Feature: gene Location: 984438-986270 bp Ori: ACJ82285.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 984738-985443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 984738-985443 bp Feature: domain Description: HNHc Note: nucleases Location: 986022-986154 bp Feature: domain Description: HNHc Note: nucleases Location: 98602 2 -986154 bp Feature: gene Location: 986450-988501 bp Ori: ACJ80373.1 Feature: domain Description: Collagen_bind Location: 986453-986765 bp Feature: domain Description: Collagen_bind Location: 986453-986765 bp Feature: domain Description: SpaA Location: 986903-987104 bp Feature: domain Description: SpaA Location: 986903-987104 bp Feature: domain Description: CollagenBindB Location: 987152-987398 bp Feature: domain Description: CollagenBindB Location: 987152 -987398 bp Feature: domain Description: COG4932 Location: 988007-988499 bp Feature: domain Description: COG4932 Location: 988007-988499 bp Feature: gene Location: 988590-989054 bp Feature: gene Location: 1736992-1737777 bp Ori: ACJ78193.1 Feature: domain Description: PP2C_2 Location: 1737322-1737661 bp Feature: domain Description: PP2 C_2 Location: 173732 2 -1737661 bp Feature: gene Location: 1737820-1739502 bp Ori: ACJ77593.1 Gene: asnB Feature: domain Description: asn_synth_AEB Location: 1737850-1739278 bp Feature: domain Description: asn_synth_AEB Location: 1737850-17392 78 bp Feature: gene Location: 1739583-1741415 bp Ori: ACJ78124.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1739883-1740588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1739883-1740588 bp Feature: domain Description: HNHc Note: nucleases Location: 1741167-1741299 bp Feature: domain Description: HNHc Note: nucleases Location: 1741167-17412 99 bp Feature: gene Location: 1742131-1742322 bp Ori: ACJ81333.1 Feature: domain Description: AsnB Location: 1742134-1742311 bp Feature: domain Description: AsnB Location: 1742 134-1742 311 bp Feature: gene Location: 1742587-1743153 bp Ori: ACJ78342.1 Feature: domain Description: PRK06811 Location: 1742590-1743148 bp Feature: domain Description: PRK06811 Location: 1742 590-1743148 bp Feature: gene Location: 3117428-3118447 bp Ori: ACJ81612.1 Feature: domain Description: Hydrolase_4 Location: 3117593-3118253 bp Feature: domain Description: Hydrolase_4 Location: 3117593-31182 53 bp Feature: gene Location: 3118457-3119581 bp Ori: ACJ81507.1 Feature: domain Description: HTH_3 Location: 3118487-3118649 bp Feature: domain Description: HTH_3 Location: 3118487-3118649 bp Feature: domain Description: TPR Location: 3119213-3119336 bp Feature: domain Description: TPR Location: 31192 13-3119336 bp Feature: gene Location: 3119941-3121587 bp Ori: ACJ80368.1 Feature: domain Description: RVT_N Location: 3119983-3120220 bp Feature: domain Description: RVT_N Location: 3119983-312 02 2 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3120274-3120934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 312 02 74-312 0934 bp Feature: domain Description: GIIM Note: maturase Location: 3121003-3121234 bp Feature: domain Description: GIIM Note: maturase Location: 312 1003-312 12 34 bp Feature: gene Location: 3122304-3122834 bp Ori: ACJ81201.1 Feature: domain Description: GrpB Location: 3122316-3122790 bp Feature: domain Description: GrpB Location: 312 2 316-312 2 790 bp Feature: gene Location: 3123421-3123897 bp Ori: ACJ81216.1 Feature: domain Description: YbaK_EbsC Location: 3123439-3123889 bp Feature: domain Description: YbaK_EbsC Location: 312 3439-312 3889 bp Feature: gene Location: 3189445-3189921 bp Ori: ACJ78456.1 Feature: domain Description: PRK02487 Location: 3189460-3189919 bp Feature: domain Description: PRK02 487 Location: 3189460-3189919 bp Feature: gene Location: 3190495-3191814 bp Ori: ACJ81617.1 Feature: domain Description: stp Location: 3190582-3191782 bp Feature: domain Description: stp Location: 3190582 -3191782 bp Feature: gene Location: 3192888-3194534 bp Ori: ACJ79294.1 Feature: domain Description: RVT_N Location: 3192930-3193167 bp Feature: domain Description: RVT_N Location: 3192 930-3193167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3193221-3193881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31932 2 1-3193881 bp Feature: domain Description: GIIM Note: maturase Location: 3193950-3194181 bp Feature: domain Description: GIIM Note: maturase Location: 3193950-3194181 bp Feature: gene Location: 3195325-3195657 bp Ori: ACJ77678.1 Feature: domain Description: IDEAL Location: 3195526-3195622 bp Feature: domain Description: IDEAL Location: 319552 6-319562 2 bp Feature: gene Location: 3195777-3196190 bp Ori: ACJ79949.1 Feature: domain Description: IscR Location: 3195780-3196173 bp Feature: domain Description: IscR Location: 3195780-3196173 bp Feature: gene Location: 3444468-3444599 bp Feature: gene Location: 3444583-3450156 bp Ori: ACJ80752.1 Feature: domain Description: B_ant_repeat Location: 3444586-3444718 bp Feature: domain Description: B_ant_repeat Location: 3444586-3444718 bp Feature: domain Description: B_ant_repeat Location: 3444958-3445111 bp Feature: domain Description: B_ant_repeat Location: 3444958-3445111 bp Feature: domain Description: B_ant_repeat Location: 3445354-3445510 bp Feature: domain Description: B_ant_repeat Location: 3445354-3445510 bp Feature: domain Description: B_ant_repeat Location: 3445750-3445906 bp Feature: domain Description: B_ant_repeat Location: 3445750-3445906 bp Feature: domain Description: B_ant_repeat Location: 3446146-3446302 bp Feature: domain Description: B_ant_repeat Location: 3446146-3446302 bp Feature: domain Description: B_ant_repeat Location: 3446542-3446695 bp Feature: domain Description: B_ant_repeat Location: 3446542 -3446695 bp Feature: domain Description: B_ant_repeat Location: 3446938-3447094 bp Feature: domain Description: B_ant_repeat Location: 3446938-3447094 bp Feature: domain Description: B_ant_repeat Location: 3447334-3447490 bp Feature: domain Description: B_ant_repeat Location: 3447334-3447490 bp Feature: domain Description: B_ant_repeat Location: 3447730-3447886 bp Feature: domain Description: B_ant_repeat Location: 3447730-3447886 bp Feature: domain Description: B_ant_repeat Location: 3448126-3448279 bp Feature: domain Description: B_ant_repeat Location: 344812 6-34482 79 bp Feature: domain Description: B_ant_repeat Location: 3448522-3448678 bp Feature: domain Description: B_ant_repeat Location: 344852 2 -3448678 bp Feature: domain Description: B_ant_repeat Location: 3448918-3449074 bp Feature: domain Description: B_ant_repeat Location: 3448918-3449074 bp Feature: domain Description: B_ant_repeat Location: 3449314-3449470 bp Feature: domain Description: B_ant_repeat Location: 3449314-3449470 bp Feature: domain Description: B_ant_repeat Location: 3449710-3449863 bp Feature: domain Description: B_ant_repeat Location: 3449710-3449863 bp Feature: gene Location: 3450325-3452253 bp Ori: ACJ81011.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3450646-3451381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3450646-3451381 bp Feature: domain Description: HNHc Note: nucleases Location: 3451972-3452137 bp Feature: domain Description: HNHc Note: nucleases Location: 3451972 -3452 137 bp Feature: gene Location: 3453260-3453571 bp Feature: gene Location: 3453651-3454235 bp Ori: ACJ81814.1 Feature: domain Description: B_ant_repeat Location: 3453783-3453939 bp Feature: domain Description: B_ant_repeat Location: 3453783-3453939 bp Feature: gene Location: 3786695-3787060 bp Ori: ACJ79183.1 Feature: domain Description: YugN Location: 3786713-3786962 bp Feature: domain Description: YugN Location: 3786713-3786962 bp Feature: gene Location: 3787107-3787730 bp Ori: ACJ79223.1 Feature: domain Description: amiF Location: 3787110-3787725 bp Feature: domain Description: amiF Location: 3787110-378772 5 bp Feature: gene Location: 3787847-3789679 bp Ori: ACJ80354.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3788147-3788852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3788147-3788852 bp Feature: domain Description: HNHc Note: nucleases Location: 3789431-3789563 bp Feature: domain Description: HNHc Note: nucleases Location: 3789431-3789563 bp Feature: gene Location: 3790395-3790784 bp Ori: ACJ81180.1 Feature: domain Description: amiF Location: 3790398-3790770 bp Feature: domain Description: amiF Location: 3790398-3790770 bp Feature: gene Location: 3791012-3791917 bp Ori: ACJ81080.1 Feature: domain Description: caa3_CtaG Location: 3791021-3791861 bp Feature: domain Description: caa3_CtaG Location: 379102 1-3791861 bp Feature: gene Location: 3878188-3879243 bp Ori: ACJ81632.1 Feature: domain Description: mtnA Location: 3878212-3879235 bp Feature: domain Description: mtnA Location: 38782 12 -38792 35 bp Feature: gene Location: 3879240-3880421 bp Ori: ACJ77857.1 Feature: domain Description: mtnK Location: 3879243-3880401 bp Feature: domain Description: mtnK Location: 38792 43-3880401 bp Feature: gene Location: 3880966-3882798 bp Ori: ACJ77259.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3881266-3881971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38812 66-3881971 bp Feature: domain Description: HNHc Note: nucleases Location: 3882550-3882682 bp Feature: domain Description: HNHc Note: nucleases Location: 3882 550-3882 682 bp Feature: gene Location: 3883514-3884293 bp Ori: ACJ79382.1 Feature: domain Description: nitrilase_5 Location: 3883628-3884279 bp Feature: domain Description: nitrilase_5 Location: 388362 8-38842 79 bp Feature: gene Location: 3884284-3885462 bp Ori: ACJ78810.1 Feature: domain Description: PRK08068 Location: 3884293-3885454 bp Feature: domain Description: PRK08068 Location: 38842 93-3885454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdiL (COG1266), PRK12856 (hypothetical protein; Provisional), RVT-GII, HNHc (smart00507), TTHA1623-like_MBL-fold (cd16322), PRK06187 (long-chain-fatty-acid--CoA ligase; Validated), Big_8 (pfam17961), Collagen_bind (pfam05737), SpaA (pfam17802), CollagenBindB (cl15753)
COG4932 (Uncharacterized surface anchored protein ), PP2C_2 (pfam13672), asn_synth_AEB (TIGR01536), AsnB (COG0367), PRK06811 (RNA polymerase factor sigma-70; Validated), Hydrolase_4 (pfam12146), HTH_3 (pfam01381), TPR (smart00028), RVT_N (pfam13655), GIIM (pfam08388)
GrpB (pfam04229), YbaK_EbsC (TIGR00011), PRK02487 (heme-degrading domain-containing protein), stp (TIGR00814), IDEAL (smart00914), IscR (TIGR02010), B_ant_repeat (TIGR01451), YugN (pfam08868), amiF (PRK13287), caa3_CtaG (TIGR02737)
mtnA (PRK05720), mtnK (PRK09550), nitrilase_5 (cd07583), PRK08068 (transaminase; Reviewed)