myRT

myRT report for GCA_000021825.1_ASM2182v1

Download annotations/find similar RTs

Seq: CP001292.1 Cyanothece sp. PCC 7424 plasmid pP742401, complete sequence (328635 bp)
Overview 1 RT 1: 263337-266860 bp Neighborhood of RT #1 [263337, 266898] PRK09974 Toxin_YhaV RVT-CRISPR Cas_Cas1 Cas2_I_II_III Feature: gene Location: 263337-263669 bp Ori: ACK73896.1 Feature: domain Description: PRK09974 Location: 263343-263667 bp Feature: domain Description: PRK09974 Location: 263343-263667 bp Feature: gene Location: 263672-264190 bp Ori: ACK73897.1 Feature: domain Description: Toxin_YhaV Location: 263714-264125 bp Feature: domain Description: Toxin_YhaV Location: 26371 4-2641 25 bp Feature: gene Location: 264545-265474 bp Ori: ACK73898.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 264752-265358 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 264752-265358 bp Feature: gene Location: 265618-266622 bp Ori: ACK73899.1 Feature: domain Description: Cas_Cas1 Location: 265630-266482 bp Feature: domain Description: Cas_Cas1 Location: 265630-266482 bp Feature: gene Location: 266623-266898 bp Ori: ACK73900.1 Feature: domain Description: Cas2_I_II_III Location: 266632-266860 bp Feature: domain Description: Cas2_I_II_III Location: 266632-266860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09974 (type II toxin-antitoxin system PrlF family antitoxin), Toxin_YhaV (pfam11663), RVT-CRISPR, Cas_Cas1 (pfam01867), Cas2_I_II_III (cl11442)

Seq: CP001291.1 Cyanothece sp. PCC 7424, complete genome (5942652 bp)
Overview 1 RT 1: 1071039-1079160 bp 2 RT 2: 2859114-2864692 bp 3 RT 3: 3730897-3737153 bp 4 RT 4: 4806482-4813103 bp 5 RT 5: 5174486-5180724 bp Neighborhood of RT #1 [1071039, 1079351] PLN02585 panB RVT_N RVT-GII GIIM HNHc RVT-UG14 ParE_toxin HTH_GlnR-like Neighborhood of RT #2 [2859114, 2864694] Cupredoxin_like_1 PRK07432 RVT_N RVT-GII RVT-GII GIIM PRK09065 MlaF Neighborhood of RT #3 [3730897, 3737153] PBP2_phosphate_like_2 HTH_ARSR RVT_N RVT-GII GIIM HNHc Neighborhood of RT #4 [4806482, 4813165] Peptidase_S13 AMP_N RVT_N RVT-GII GIIM McrA PRK10879 Uma2 Neighborhood of RT #5 [5174486, 5181170] MalK RVT_N RVT-GII ntrCD ntrCD NMT1_2 Feature: gene Location: 1071039-1071728 bp Ori: ACK69421.1 Feature: domain Description: PLN02585 Location: 1071054-1071723 bp Feature: domain Description: PLN02 585 Location: 1071054-107172 3 bp Feature: gene Location: 1071916-1072704 bp Ori: ACK69422.1 Feature: domain Description: panB Location: 1071937-1072702 bp Feature: domain Description: panB Location: 1071937-1072 702 bp Feature: gene Location: 1073514-1075460 bp Ori: ACK69423.1 Feature: domain Description: RVT_N Location: 1073580-1073826 bp Feature: domain Description: RVT_N Location: 1073580-107382 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1073868-1074564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1073868-1074564 bp Feature: domain Description: GIIM Note: maturase Location: 1074669-1074897 bp Feature: domain Description: GIIM Note: maturase Location: 1074669-1074897 bp Feature: domain Description: HNHc Note: nucleases Location: 1075095-1075254 bp Feature: domain Description: HNHc Note: nucleases Location: 1075095-10752 54 bp Feature: gene Location: 1076773-1078305 bp Ori: ACK69424.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 1077196-1077688 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 1077196-1077688 bp Feature: gene Location: 1078499-1078615 bp Ori: ACK69425.1 Feature: domain Description: ParE_toxin Location: 1078514-1078607 bp Feature: domain Description: ParE_toxin Location: 1078514-1078607 bp Feature: gene Location: 1078905-1079351 bp Ori: ACK69426.1 Feature: domain Description: HTH_GlnR-like Location: 1078923-1079160 bp Feature: domain Description: HTH_GlnR-like Location: 107892 3-1079160 bp Feature: gene Location: 2859114-2859557 bp Ori: ACK70995.1 Feature: domain Description: Cupredoxin_like_1 Location: 2859219-2859546 bp Feature: domain Description: Cupredoxin_like_1 Location: 2 8592 19-2 859546 bp Feature: gene Location: 2859574-2860401 bp Ori: ACK70996.1 Feature: domain Description: PRK07432 Location: 2859577-2860393 bp Feature: domain Description: PRK07432 Location: 2 859577-2 860393 bp Feature: gene Location: 2860792-2862000 bp Ori: ACK70997.1 Feature: domain Description: RVT_N Location: 2860828-2861053 bp Feature: domain Description: RVT_N Location: 2 86082 8-2 861053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2861110-2861524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 861110-2 86152 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2861527-2861692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 86152 7-2 861692 bp Feature: domain Description: GIIM Note: maturase Location: 2861749-2861926 bp Feature: domain Description: GIIM Note: maturase Location: 2 861749-2 86192 6 bp Feature: gene Location: 2863032-2863757 bp Ori: ACK70998.1 Feature: domain Description: PRK09065 Location: 2863035-2863737 bp Feature: domain Description: PRK09065 Location: 2 863035-2 863737 bp Feature: gene Location: 2863915-2864694 bp Ori: ACK70999.1 Feature: domain Description: MlaF Location: 2863924-2864692 bp Feature: domain Description: MlaF Location: 2 86392 4-2 864692 bp Feature: gene Location: 3730897-3731946 bp Ori: ACK71733.1 Feature: domain Description: PBP2_phosphate_like_2 Location: 3731005-3731785 bp Feature: domain Description: PBP2 _phosphate_like_2 Location: 3731005-3731785 bp Feature: gene Location: 3732055-3732387 bp Ori: ACK71734.1 Feature: domain Description: HTH_ARSR Location: 3732103-3732313 bp Feature: domain Description: HTH_ARSR Location: 3732 103-3732 313 bp Feature: gene Location: 3733467-3735413 bp Ori: ACK71735.1 Feature: domain Description: RVT_N Location: 3733533-3733779 bp Feature: domain Description: RVT_N Location: 3733533-3733779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3733821-3734517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373382 1-3734517 bp Feature: domain Description: GIIM Note: maturase Location: 3734622-3734850 bp Feature: domain Description: GIIM Note: maturase Location: 373462 2 -3734850 bp Feature: domain Description: HNHc Note: nucleases Location: 3735048-3735207 bp Feature: domain Description: HNHc Note: nucleases Location: 3735048-37352 07 bp Feature: gene Location: 3736065-3736286 bp Feature: gene Location: 3736785-3737153 bp Feature: gene Location: 4806482-4807909 bp Ori: ACK72700.1 Feature: domain Description: Peptidase_S13 Location: 4806587-4807877 bp Feature: domain Description: Peptidase_S13 Location: 4806587-4807877 bp Feature: gene Location: 4808320-4808466 bp Ori: ACK72701.1 Feature: domain Description: AMP_N Location: 4808341-4808452 bp Feature: domain Description: AMP_N Location: 4808341-4808452 bp Feature: gene Location: 4809205-4811190 bp Ori: ACK72702.1 Feature: domain Description: RVT_N Location: 4809271-4809517 bp Feature: domain Description: RVT_N Location: 48092 71-4809517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4809559-4810249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4809559-48102 49 bp Feature: domain Description: GIIM Note: maturase Location: 4810354-4810582 bp Feature: domain Description: GIIM Note: maturase Location: 4810354-4810582 bp Feature: domain Description: McrA Location: 4810672-4810942 bp Feature: domain Description: McrA Location: 4810672 -4810942 bp Feature: gene Location: 4811227-4812396 bp Ori: ACK72703.1 Feature: domain Description: PRK10879 Location: 4811230-4812391 bp Feature: domain Description: PRK10879 Location: 48112 30-4812 391 bp Feature: gene Location: 4812578-4813165 bp Ori: ACK72704.1 Feature: domain Description: Uma2 Location: 4812614-4813103 bp Feature: domain Description: Uma2 Location: 4812 614-4813103 bp Feature: gene Location: 5174486-5174833 bp Feature: gene Location: 5175132-5175791 bp Ori: ACK73033.1 Feature: domain Description: MalK Location: 5175135-5175774 bp Feature: domain Description: MalK Location: 5175135-5175774 bp Feature: gene Location: 5176532-5177476 bp Ori: ACK73034.1 Feature: domain Description: RVT_N Location: 5176595-5176802 bp Feature: domain Description: RVT_N Location: 5176595-5176802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5176883-5177123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5176883-517712 3 bp Feature: gene Location: 5178135-5178977 bp Ori: ACK73035.1 Feature: domain Description: ntrCD Location: 5178258-5178945 bp Feature: domain Description: ntrCD Location: 51782 58-5178945 bp Feature: gene Location: 5179149-5181170 bp Ori: ACK73036.1 Feature: domain Description: ntrCD Location: 5179224-5179911 bp Feature: domain Description: ntrCD Location: 51792 2 4-5179911 bp Feature: domain Description: NMT1_2 Location: 5179980-5180724 bp Feature: domain Description: NMT1_2 Location: 5179980-518072 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN02585 (magnesium protoporphyrin IX methyltransferase), panB (TIGR00222), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT-UG14, ParE_toxin (pfam05016), HTH_GlnR-like (cd01105), Cupredoxin_like_1 (cd04210)
PRK07432 (S-methyl-5'-thioadenosine phosphorylase), PRK09065 (glutamine amidotransferase; Provisional), MlaF (COG1127), PBP2_phosphate_like_2 (cd13654), HTH_ARSR (smart00418), Peptidase_S13 (pfam02113), AMP_N (smart01011), McrA (COG4058), PRK10879 (proline aminopeptidase P II; Provisional), Uma2 (pfam05685)
MalK (COG3839), ntrCD (TIGR01184), NMT1_2 (pfam13379)