myRT

myRT report for GCA_000021865.1_ASM2186v1

Download annotations/find similar RTs

Seq: CP001312.1 Rhodobacter capsulatus SB 1003, complete genome (3738958 bp)
Overview 1 RT 1: 1340004-1345941 bp 2 RT 2: 1353038-1360478 bp 3 RT 3: 2156451-2164274 bp 4 RT 4: 2754568-2758826 bp Neighborhood of RT #1 [1340004, 1345941] PinE SLATT_5 RVT-UG17 Neighborhood of RT #2 [1353038, 1360630] RAMP_I_III RAMP_I_III RAMP_I_III TIGR03986 Cas2_I_II_III RVT-CRISPR Cas1_I-II-III RVT-GII CRISPR_Cas6 PIN_NicB-like Neighborhood of RT #3 [2156451, 2164274] MethyltransfD12 RVT-GII Neighborhood of RT #4 [2754568, 2758826] RVT-UG2 Resolvase Recombinase Feature: gene Location: 1340004-1340639 bp Ori: ADE85019.1 Feature: domain Description: PinE Location: 1340013-1340625 bp Feature: domain Description: PinE Location: 1 34001 3-1 340625 bp Feature: gene Location: 1341005-1341655 bp Ori: ADE85020.1 Feature: domain Description: SLATT_5 Location: 1341095-1341632 bp Feature: domain Description: SLATT_5 Location: 1 341 095-1 341 632 bp Feature: gene Location: 1341665-1343008 bp Ori: ADE85021.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1341893-1342493 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 341 893-1 342493 bp Feature: gene Location: 1344675-1345001 bp Feature: gene Location: 1345540-1345941 bp Feature: gene Location: 1353038-1355665 bp Ori: ADE85029.1 Feature: domain Description: RAMP_I_III Location: 1353077-1353461 bp Feature: domain Description: RAMP_I_III Location: 1 353077-1 353461 bp Feature: domain Description: RAMP_I_III Location: 1353791-1354220 bp Feature: domain Description: RAMP_I_III Location: 1 353791 -1 354220 bp Feature: domain Description: RAMP_I_III Location: 1354556-1354808 bp Feature: domain Description: RAMP_I_III Location: 1 354556-1 354808 bp Feature: domain Description: TIGR03986 Location: 1354994-1355261 bp Feature: domain Description: TIGR03986 Location: 1 354994-1 355261 bp Feature: gene Location: 1355662-1355952 bp Ori: ADE85030.1 Feature: domain Description: Cas2_I_II_III Location: 1355689-1355902 bp Feature: domain Description: Cas2_I_II_III Location: 1 355689-1 355902 bp Feature: gene Location: 1356526-1358127 bp Ori: ADE85031.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1356529-1356988 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 356529-1 356988 bp Feature: domain Description: Cas1_I-II-III Location: 1357132-1358083 bp Feature: domain Description: Cas1 _I-II-III Location: 1 3571 32-1 358083 bp Feature: gene Location: 1357974-1358504 bp Ori: ADE85032.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1358202-1358310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 358202-1 35831 0 bp Feature: gene Location: 1358965-1359873 bp Ori: ADE85033.1 Feature: domain Description: CRISPR_Cas6 Location: 1359511-1359853 bp Feature: domain Description: CRISPR_Cas6 Location: 1 35951 1 -1 359853 bp Feature: gene Location: 1359986-1360630 bp Ori: ADE85034.1 Feature: domain Description: PIN_NicB-like Location: 1360025-1360478 bp Feature: domain Description: PIN_NicB-like Location: 1 360025-1 360478 bp Feature: gene Location: 2156451-2156798 bp Feature: gene Location: 2156979-2157368 bp Ori: ADE85747.1 Gene: dam Feature: domain Description: MethyltransfD12 Location: 2157018-2157222 bp Feature: domain Description: MethyltransfD1 2 Location: 21 5701 8-21 57222 bp Feature: gene Location: 2157353-2157628 bp Ori: ADE85748.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2157554-2157617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 57554-21 5761 7 bp Feature: gene Location: 2158410-2162267 bp Feature: gene Location: 2162724-2164274 bp Feature: gene Location: 2754568-2754720 bp Feature: gene Location: 2754778-2755056 bp Feature: gene Location: 2755624-2757123 bp Ori: ADE86296.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2755843-2756749 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2755843-2756749 bp Feature: gene Location: 2757692-2758357 bp Ori: ADE86297.1 Feature: domain Description: Resolvase Location: 2757707-2758124 bp Feature: domain Description: Resolvase Location: 2757707-27581 24 bp Feature: domain Description: Recombinase Location: 2758208-2758337 bp Feature: domain Description: Recombinase Location: 2758208-2758337 bp Feature: gene Location: 2758512-2758826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), SLATT_5 (pfam18160), RVT-UG17, RAMP_I_III (cl21471), TIGR03986 (CRISPR-associated protein), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), RVT-GII, CRISPR_Cas6 (pfam10040)
PIN_NicB-like (cd18722), MethyltransfD12 (pfam02086), RVT-UG2, Resolvase (smart00857), Recombinase (pfam07508)