myRT

myRT report for GCA_000022245.1_ASM2224v1

Download annotations/find similar RTs

Seq: CP001384.1 Shigella flexneri 2002017 plasmid pSFxv_1, complete sequence (223364 bp)
Overview 1 RT 1: 29530-31962 bp 2 RT 2: 155474-158478 bp Neighborhood of RT #1 [29530, 31988] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Neighborhood of RT #2 [155474, 158498] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 29530-29874 bp Ori: ADA76764.1 Feature: domain Description: COG3547 Location: 29536-29860 bp Feature: domain Description: COG3547 Location: 29536-29860 bp Feature: gene Location: 29901-30047 bp Ori: ADA76765.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 29913-30024 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2991 3-30024 bp Feature: gene Location: 30163-31290 bp Ori: ADA76766.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30259-30913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30259-3091 3 bp Feature: domain Description: GIIM Note: maturase Location: 30991-31213 bp Feature: domain Description: GIIM Note: maturase Location: 30991 -31 21 3 bp Feature: gene Location: 31271-31396 bp Feature: gene Location: 31857-31988 bp Ori: ADA76768.1 Feature: domain Description: DDE_Tnp_IS66 Location: 31869-31962 bp Feature: domain Description: DDE_Tnp_IS66 Location: 31 869-31 962 bp Feature: gene Location: 155474-155605 bp Feature: gene Location: 155958-156362 bp Ori: ADA76929.1 Feature: domain Description: GIIM Note: maturase Location: 156069-156288 bp Feature: domain Description: GIIM Note: maturase Location: 1 56069-1 56288 bp Feature: gene Location: 156337-157140 bp Ori: ADA76930.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156637-157132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 56637-1 571 32 bp Feature: gene Location: 157153-157353 bp Ori: ADA76931.1 Feature: domain Description: Tra5 Location: 157162-157336 bp Feature: domain Description: Tra5 Location: 1 571 62-1 57336 bp Feature: gene Location: 157749-158498 bp Ori: ADA76932.1 Gene: phoN1 Feature: domain Description: PAP2_acid_phosphatase Location: 157824-158478 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 57824-1 58478 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: CP001383.1 Shigella flexneri 2002017, complete genome (4650856 bp)
Overview 1 RT 1: 1090378-1093834 bp 2 RT 2: 3109533-3114563 bp Neighborhood of RT #1 [1090378, 1093834] Inovirus_Gp2 PHA02517 RVT-GII GIIM Neighborhood of RT #2 [3109533, 3114563] PHA02517 RVT-GII GIIM Feature: gene Location: 1090378-1090674 bp Ori: ADA73378.1 Feature: domain Description: Inovirus_Gp2 Location: 1090402-1090666 bp Feature: domain Description: Inovirus_Gp2 Location: 1090402 -1090666 bp Feature: gene Location: 1091083-1091529 bp Ori: ADA73379.1 Feature: domain Description: PHA02517 Location: 1091086-1091527 bp Feature: domain Description: PHA02 517 Location: 1091086-109152 7 bp Feature: gene Location: 1091646-1093169 bp Ori: ADA73381.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1091919-1092651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1091919-1092 651 bp Feature: domain Description: GIIM Note: maturase Location: 1092726-1092924 bp Feature: domain Description: GIIM Note: maturase Location: 1092 72 6-1092 92 4 bp Feature: gene Location: 1093123-1093548 bp Feature: gene Location: 1093583-1093834 bp Feature: gene Location: 3109533-3110066 bp Feature: gene Location: 3111809-3112195 bp Ori: ADA75304.1 Feature: domain Description: PHA02517 Location: 3111812-3112193 bp Feature: domain Description: PHA02 517 Location: 3111812 -3112 193 bp Feature: gene Location: 3112372-3113646 bp Ori: ADA75305.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3112396-3113128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3112 396-311312 8 bp Feature: domain Description: GIIM Note: maturase Location: 3113203-3113401 bp Feature: domain Description: GIIM Note: maturase Location: 31132 03-3113401 bp Feature: gene Location: 3113852-3114277 bp Feature: gene Location: 3114312-3114563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inovirus_Gp2 (pfam11726), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)