myRT

myRT report for GCA_000023465.1_ASM2346v1

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Seq: CP001650.1 Zunongwangia profunda SM-A87, complete genome (5128187 bp)
Overview 1 RT 1: 1409972-1414252 bp 2 RT 2: 3588564-3592790 bp 3 RT 3: 4278304-4282560 bp Neighborhood of RT #1 [1409972, 1414252] SusD_RagB RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #2 [3588564, 3592879] COG3547 RVT-GII GIIM COG3795 COG4941 Neighborhood of RT #3 [4278304, 4282592] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 TnpB_IS66 Feature: gene Location: 1409972-1410625 bp Feature: gene Location: 1410965-1411555 bp Ori: ADF51638.1 Feature: domain Description: SusD_RagB Location: 1411106-1411553 bp Feature: domain Description: SusD_RagB Location: 1 41 1 1 06-1 41 1 553 bp Feature: gene Location: 1412056-1413129 bp Ori: ADF51639.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1412104-1412758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 21 04-1 41 2758 bp Feature: domain Description: GIIM Note: maturase Location: 1412836-1413055 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 2836-1 41 3055 bp Feature: gene Location: 1413235-1414008 bp Ori: ADF51640.1 Feature: domain Description: DDE_Tnp_IS66 Location: 1413247-1413850 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 41 3247-1 41 3850 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1413880-1413979 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 41 3880-1 41 3979 bp Feature: gene Location: 1414106-1414252 bp Feature: gene Location: 3588564-3589013 bp Ori: ADF53626.1 Feature: domain Description: COG3547 Location: 3588588-3588957 bp Feature: domain Description: COG3547 Location: 3588588-3588957 bp Feature: gene Location: 3589387-3589512 bp Feature: gene Location: 3589911-3591119 bp Ori: ADF53628.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3590079-3590739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3590079-3590739 bp Feature: domain Description: GIIM Note: maturase Location: 3590823-3591042 bp Feature: domain Description: GIIM Note: maturase Location: 3590823-3591 042 bp Feature: gene Location: 3591331-3591696 bp Ori: ADF53629.1 Feature: domain Description: COG3795 Location: 3591340-3591685 bp Feature: domain Description: COG3795 Location: 3591 340-3591 685 bp Feature: gene Location: 3591677-3592879 bp Ori: ADF53630.1 Feature: domain Description: COG4941 Location: 3591692-3592790 bp Feature: domain Description: COG4941 Location: 3591 692-3592790 bp Feature: gene Location: 4278304-4278813 bp Feature: gene Location: 4278863-4279624 bp Ori: ADF54285.1 Feature: domain Description: DDE_Tnp_IS66 Location: 4278866-4279478 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4278866-4279478 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4279499-4279607 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4279499-4279607 bp Feature: gene Location: 4279727-4280965 bp Ori: ADF54286.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4279940-4280594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4279940-4280594 bp Feature: domain Description: GIIM Note: maturase Location: 4280672-4280891 bp Feature: domain Description: GIIM Note: maturase Location: 4280672-4280891 bp Feature: gene Location: 4281477-4282196 bp Ori: ADF54287.1 Feature: domain Description: COG3436 Location: 4281723-4282173 bp Feature: domain Description: COG3436 Location: 4281 723-42821 73 bp Feature: gene Location: 4282239-4282592 bp Ori: ADF54288.1 Feature: domain Description: TnpB_IS66 Location: 4282269-4282560 bp Feature: domain Description: TnpB_IS66 Location: 4282269-4282560 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SusD_RagB (pfam07980), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), COG3795 (Uncharacterized conserved protein ), COG4941 (Predicted RNA polymerase sigma factor, contains C-terminal TPR domain ), COG3436 (Transposase ), TnpB_IS66 (pfam05717)