myRT

myRT report for GCA_000024165.1_ASM2416v1

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Seq: CP001715.1 Candidatus Accumulibacter phosphatis clade IIA str. UW-1, complete genome (5058518 bp)
Overview 1 RT 1: 639402-646349 bp 2 RT 2: 1967199-1973145 bp 3 RT 3: 2021711-2025126 bp 4 RT 4: 2039340-2044211 bp 5 RT 5: 2648920-2659500 bp 6 RT 6: 3551870-3557328 bp 7 RT 7: 3647341-3652259 bp 8 RT 8: 4990054-4994701 bp Neighborhood of RT #1 [639402, 646480] PRK09183 COG4584 RVT-Retrons zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 INT_Rci_Hp1_C Neighborhood of RT #2 [1967199, 1973207] RVT-Retrons FixJ COG4191 Neighborhood of RT #3 [2021711, 2025126] DUF1318 Sco1 RVT-GII GIIM SnoaL Neighborhood of RT #4 [2039340, 2044211] RVT-GII GIIM Neighborhood of RT #5 [2648920, 2659517] HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind TIR_2 COG5635 pfam03781 RVT-DGRs YfmG NACHT YfmG Neighborhood of RT #6 [3551870, 3557486] RAYT RVT-DGRs Hrd YfmG Neighborhood of RT #7 [3647341, 3652270] PEP-CTERM RVT-GII GIIM TPR TPR_2 TPR TPR TPR_2 DUF29 Neighborhood of RT #8 [4990054, 4994701] RVT-GII GIIM Feature: gene Location: 639402-640187 bp Ori: ACV33878.1 Feature: domain Description: PRK09183 Location: 639405-640170 bp Feature: domain Description: PRK091 83 Location: 639405-6401 70 bp Feature: gene Location: 640184-641272 bp Ori: ACV33879.1 Feature: domain Description: COG4584 Location: 640187-641054 bp Feature: domain Description: COG4584 Location: 6401 87-641 054 bp Feature: gene Location: 642270-643985 bp Ori: ACV33880.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 642399-643026 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 642399-643026 bp Feature: gene Location: 644255-645550 bp Ori: ACV33881.1 Feature: domain Description: zf-ISL3 Location: 644420-644552 bp Feature: domain Description: zf-ISL3 Location: 644420-644552 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 644573-644720 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 644573-644720 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 644765-645467 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 644765-645467 bp Feature: gene Location: 645740-646480 bp Ori: ACV33882.1 Feature: domain Description: INT_Rci_Hp1_C Location: 645842-646349 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 645842-646349 bp Feature: gene Location: 1967199-1968653 bp Feature: gene Location: 1968730-1968843 bp Feature: gene Location: 1969326-1970762 bp Ori: ACV35050.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1969836-1970478 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 969836-1 970478 bp Feature: gene Location: 1971011-1971634 bp Ori: ACV35051.1 Feature: domain Description: FixJ Location: 1971026-1971608 bp Feature: domain Description: FixJ Location: 1 971 026-1 971 608 bp Feature: gene Location: 1971624-1973207 bp Ori: ACV35052.1 Feature: domain Description: COG4191 Location: 1972482-1973145 bp Feature: domain Description: COG41 91 Location: 1 972482-1 9731 45 bp Feature: gene Location: 2021711-2022142 bp Ori: ACV35098.1 Feature: domain Description: DUF1318 Location: 2021846-2022137 bp Feature: domain Description: DUF1 31 8 Location: 2021 846-20221 37 bp Feature: gene Location: 2022161-2022742 bp Ori: ACV35099.1 Feature: domain Description: Sco1 Location: 2022170-2022734 bp Feature: domain Description: Sco1 Location: 20221 70-2022734 bp Feature: gene Location: 2023488-2024063 bp Ori: ACV35100.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2023494-2023593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2023494-2023593 bp Feature: domain Description: GIIM Note: maturase Location: 2023635-2023839 bp Feature: domain Description: GIIM Note: maturase Location: 2023635-2023839 bp Feature: gene Location: 2024132-2024551 bp Ori: ACV35101.1 Feature: domain Description: SnoaL Location: 2024159-2024525 bp Feature: domain Description: SnoaL Location: 20241 59-2024525 bp Feature: gene Location: 2024644-2025126 bp Feature: gene Location: 2039340-2039450 bp Feature: gene Location: 2039437-2040666 bp Feature: gene Location: 2041301-2042662 bp Ori: ACV35120.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2041607-2042225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2041 607-2042225 bp Feature: domain Description: GIIM Note: maturase Location: 2042270-2042465 bp Feature: domain Description: GIIM Note: maturase Location: 2042270-2042465 bp Feature: gene Location: 2043144-2043830 bp Feature: gene Location: 2043855-2044211 bp Feature: gene Location: 2648920-2651601 bp Ori: ACV35610.1 Feature: domain Description: HemolysinCabind Location: 2650396-2650498 bp Feature: domain Description: HemolysinCabind Location: 2650396-2650498 bp Feature: domain Description: HemolysinCabind Location: 2650501-2650603 bp Feature: domain Description: HemolysinCabind Location: 2650501 -2650603 bp Feature: domain Description: HemolysinCabind Location: 2650633-2650696 bp Feature: domain Description: HemolysinCabind Location: 2650633-2650696 bp Feature: domain Description: HemolysinCabind Location: 2650849-2650915 bp Feature: domain Description: HemolysinCabind Location: 2650849-265091 5 bp Feature: domain Description: HemolysinCabind Location: 2651254-2651308 bp Feature: domain Description: HemolysinCabind Location: 2651 254-2651 308 bp Feature: gene Location: 2651844-2655122 bp Ori: ACV35611.1 Feature: domain Description: TIR_2 Location: 2652243-2652591 bp Feature: domain Description: TIR_2 Location: 2652243-2652591 bp Feature: domain Description: COG5635 Location: 2652807-2653374 bp Feature: domain Description: COG5635 Location: 2652807-2653374 bp Feature: domain Description: pfam03781 Location: 2654433-2655099 bp Feature: domain Description: pfam03781 Location: 2654433-2655099 bp Feature: gene Location: 2655195-2656289 bp Ori: ACV35612.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2655402-2656095 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2655402-2656095 bp Feature: gene Location: 2656557-2656685 bp Ori: ACV35613.1 Feature: domain Description: YfmG Location: 2656560-2656668 bp Feature: domain Description: YfmG Location: 2656560-2656668 bp Feature: gene Location: 2656863-2659517 bp Ori: ACV35614.1 Feature: domain Description: NACHT Location: 2657133-2657631 bp Feature: domain Description: NACHT Location: 26571 33-2657631 bp Feature: domain Description: YfmG Location: 2658573-2659500 bp Feature: domain Description: YfmG Location: 2658573-2659500 bp Feature: gene Location: 3551870-3552517 bp Feature: gene Location: 3552517-3553041 bp Ori: ACV36361.1 Feature: domain Description: RAYT Location: 3552520-3552958 bp Feature: domain Description: RAYT Location: 3552520-3552958 bp Feature: gene Location: 3553095-3554126 bp Ori: ACV36362.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3553299-3553920 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3553299-3553920 bp Feature: gene Location: 3554123-3554614 bp Ori: ACV36363.1 Feature: domain Description: Hrd Location: 3554390-3554591 bp Feature: domain Description: Hrd Location: 3554390-3554591 bp Feature: gene Location: 3554658-3557486 bp Ori: ACV36364.1 Feature: domain Description: YfmG Location: 3556596-3557328 bp Feature: domain Description: YfmG Location: 3556596-3557328 bp Feature: gene Location: 3647341-3647643 bp Feature: gene Location: 3647710-3647970 bp Ori: ACV36441.1 Feature: domain Description: PEP-CTERM Location: 3647890-3647959 bp Feature: domain Description: PEP-CTERM Location: 3647890-3647959 bp Feature: gene Location: 3648053-3649447 bp Ori: ACV36442.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3648386-3649001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3648386-3649001 bp Feature: domain Description: GIIM Note: maturase Location: 3649049-3649274 bp Feature: domain Description: GIIM Note: maturase Location: 3649049-3649274 bp Feature: gene Location: 3649913-3651220 bp Ori: ACV36443.1 Feature: domain Description: TPR Location: 3650063-3650327 bp Feature: domain Description: TPR Location: 3650063-3650327 bp Feature: domain Description: TPR_2 Location: 3650381-3650453 bp Feature: domain Description: TPR_2 Location: 3650381 -3650453 bp Feature: domain Description: TPR Location: 3650486-3650735 bp Feature: domain Description: TPR Location: 3650486-3650735 bp Feature: domain Description: TPR Location: 3650765-3651044 bp Feature: domain Description: TPR Location: 3650765-3651 044 bp Feature: domain Description: TPR_2 Location: 3651080-3651167 bp Feature: domain Description: TPR_2 Location: 3651 080-3651 1 67 bp Feature: gene Location: 3651833-3652270 bp Ori: ACV36444.1 Feature: domain Description: DUF29 Location: 3651848-3652259 bp Feature: domain Description: DUF29 Location: 3651 848-3652259 bp Feature: gene Location: 4990054-4990764 bp Feature: gene Location: 4990870-4991799 bp Feature: gene Location: 4991894-4993156 bp Ori: ACV37636.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4992101-4992719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49921 01 -499271 9 bp Feature: domain Description: GIIM Note: maturase Location: 4992764-4992959 bp Feature: domain Description: GIIM Note: maturase Location: 4992764-4992959 bp Feature: gene Location: 4993275-4993922 bp Feature: gene Location: 4994027-4994701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase ), RVT-Retrons, zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), INT_Rci_Hp1_C (cd00796), FixJ (COG4566), COG4191 (Signal transduction histidine kinase regulating C4-dicarboxylate transport system ), DUF1318 (pfam07027)
Sco1 (COG1999), RVT-GII, GIIM (pfam08388), SnoaL (pfam07366), HemolysinCabind (pfam00353), TIR_2 (pfam13676), COG5635 (Predicted NTPase, NACHT family domain ), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), RVT-DGRs, YfmG (COG1262)
NACHT (pfam05729), RAYT (COG1943), Hrd (LOAD_Hrd), PEP-CTERM, TPR (smart00028), TPR_2 (pfam07719), DUF29 (pfam01724)