myRT

myRT report for GCA_000024325.1_ASM2432v1

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Seq: CP001734.1 Desulfohalobium retbaense DSM 5692, complete genome (2864304 bp)
Overview 1 RT 1: 194878-198428 bp 2 RT 2: 744298-756501 bp 3 RT 3: 1004824-1010862 bp 4 RT 4: 1040136-1049761 bp 5 RT 5: 1133965-1139816 bp 6 RT 6: 1258795-1263997 bp 7 RT 7: 2608612-2613815 bp Neighborhood of RT #1 [194878, 198436] RVT-GII GIIM rmlA Fer4_13 Neighborhood of RT #2 [744298, 757148] PseF COG5421 RVT-GII COG3666 DDE_Tnp_1_6 RVT-GII GIIM TPR MAF_flag10 Neighborhood of RT #3 [1004824, 1010876] secF secF RVT-GII GIIM glpX TktA Neighborhood of RT #4 [1040136, 1049814] lipoyltrans RVT-GII GIIM COG4715 HepA SpoT Neighborhood of RT #5 [1133965, 1139827] XerC INT_Rci_Hp1_C RVT-GII GIIM PRK05431 Neighborhood of RT #6 [1258795, 1264017] PRK06246 PRK06842 RVT-GII PRK12564 CMP-KDO-Synthetase Neighborhood of RT #7 [2608612, 2613820] TauC PBP2_ThiY RVT-GII GIIM PRK05250 Feature: gene Location: 194878-195030 bp Feature: gene Location: 195260-195442 bp Feature: gene Location: 195505-196905 bp Ori: ACV67454.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195841-196459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 95841 -1 96459 bp Feature: domain Description: GIIM Note: maturase Location: 196507-196726 bp Feature: domain Description: GIIM Note: maturase Location: 1 96507-1 96726 bp Feature: gene Location: 197120-198196 bp Ori: ACV67455.1 Feature: domain Description: rmlA Location: 197309-198161 bp Feature: domain Description: rmlA Location: 1 97309-1 981 61 bp Feature: gene Location: 198245-198436 bp Ori: ACV67456.1 Feature: domain Description: Fer4_13 Location: 198263-198428 bp Feature: domain Description: Fer4_1 3 Location: 1 98263-1 98428 bp Feature: gene Location: 744298-745020 bp Ori: ACV67917.1 Feature: domain Description: PseF Location: 744337-744994 bp Feature: domain Description: PseF Location: 744337-744994 bp Feature: gene Location: 745346-747073 bp Ori: ACV67918.1 Feature: domain Description: COG5421 Location: 745511-746897 bp Feature: domain Description: COG5421 Location: 74551 1 -746897 bp Feature: gene Location: 747084-748895 bp Ori: ACV67919.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747828-748515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747828-74851 5 bp Feature: gene Location: 750009-751346 bp Ori: ACV67920.1 Feature: domain Description: COG3666 Location: 750036-750462 bp Feature: domain Description: COG3666 Location: 750036-750462 bp Feature: domain Description: DDE_Tnp_1_6 Location: 751125-751314 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 751 1 25-751 31 4 bp Feature: gene Location: 751886-753211 bp Ori: ACV67921.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752165-752822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7521 65-752822 bp Feature: domain Description: GIIM Note: maturase Location: 752903-753125 bp Feature: domain Description: GIIM Note: maturase Location: 752903-7531 25 bp Feature: gene Location: 754669-755175 bp Ori: ACV67922.1 Feature: domain Description: TPR Location: 754690-754957 bp Feature: domain Description: TPR Location: 754690-754957 bp Feature: gene Location: 755211-757148 bp Ori: ACV67923.1 Feature: domain Description: MAF_flag10 Location: 756057-756501 bp Feature: domain Description: MAF_flag1 0 Location: 756057-756501 bp Feature: gene Location: 1004824-1005903 bp Ori: ACV68138.1 Feature: domain Description: secF Location: 1004854-1005340 bp Feature: domain Description: secF Location: 1 004854-1 005340 bp Feature: domain Description: secF Location: 1005391-1005856 bp Feature: domain Description: secF Location: 1 005391 -1 005856 bp Feature: gene Location: 1006143-1006325 bp Feature: gene Location: 1006388-1007788 bp Ori: ACV68140.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006724-1007342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 006724-1 007342 bp Feature: domain Description: GIIM Note: maturase Location: 1007390-1007609 bp Feature: domain Description: GIIM Note: maturase Location: 1 007390-1 007609 bp Feature: gene Location: 1007882-1008865 bp Ori: ACV68141.1 Feature: domain Description: glpX Location: 1007897-1008836 bp Feature: domain Description: glpX Location: 1 007897-1 008836 bp Feature: gene Location: 1008894-1010876 bp Ori: ACV68142.1 Feature: domain Description: TktA Location: 1008906-1010862 bp Feature: domain Description: TktA Location: 1 008906-1 01 0862 bp Feature: gene Location: 1040136-1041173 bp Ori: ACV68172.1 Feature: domain Description: lipoyltrans Location: 1040154-1041063 bp Feature: domain Description: lipoyltrans Location: 1 0401 54-1 041 063 bp Feature: gene Location: 1041626-1042228 bp Feature: gene Location: 1042349-1043749 bp Ori: ACV68174.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1042685-1043303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 042685-1 043303 bp Feature: domain Description: GIIM Note: maturase Location: 1043351-1043570 bp Feature: domain Description: GIIM Note: maturase Location: 1 043351 -1 043570 bp Feature: gene Location: 1043840-1047046 bp Ori: ACV68175.1 Feature: domain Description: COG4715 Location: 1044047-1044185 bp Feature: domain Description: COG471 5 Location: 1 044047-1 0441 85 bp Feature: domain Description: HepA Location: 1045415-1047041 bp Feature: domain Description: HepA Location: 1 04541 5-1 047041 bp Feature: gene Location: 1047613-1049814 bp Ori: ACV68176.1 Feature: domain Description: SpoT Location: 1047619-1049761 bp Feature: domain Description: SpoT Location: 1 04761 9-1 049761 bp Feature: gene Location: 1133965-1134963 bp Ori: ACV68249.1 Feature: domain Description: XerC Location: 1134094-1134859 bp Feature: domain Description: XerC Location: 1 1 34094-1 1 34859 bp Feature: gene Location: 1135314-1136429 bp Ori: ACV68250.1 Feature: domain Description: INT_Rci_Hp1_C Location: 1135800-1136277 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 1 1 35800-1 1 36277 bp Feature: gene Location: 1136414-1137814 bp Ori: ACV68251.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1136750-1137368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 36750-1 1 37368 bp Feature: domain Description: GIIM Note: maturase Location: 1137416-1137635 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 3741 6-1 1 37635 bp Feature: gene Location: 1137877-1138059 bp Feature: gene Location: 1138547-1139827 bp Ori: ACV68253.1 Feature: domain Description: PRK05431 Location: 1138550-1139816 bp Feature: domain Description: PRK05431 Location: 1 1 38550-1 1 3981 6 bp Feature: gene Location: 1258795-1259637 bp Ori: ACV68356.1 Feature: domain Description: PRK06246 Location: 1258798-1259626 bp Feature: domain Description: PRK06246 Location: 1 258798-1 259626 bp Feature: gene Location: 1259634-1260188 bp Ori: ACV68357.1 Feature: domain Description: PRK06842 Location: 1259646-1260168 bp Feature: domain Description: PRK06842 Location: 1 259646-1 2601 68 bp Feature: gene Location: 1260230-1262041 bp Ori: ACV68358.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1260974-1261661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 260974-1 261 661 bp Feature: gene Location: 1262173-1263282 bp Ori: ACV68359.1 Feature: domain Description: PRK12564 Location: 1262179-1263268 bp Feature: domain Description: PRK1 2564 Location: 1 2621 79-1 263268 bp Feature: gene Location: 1263283-1264017 bp Ori: ACV68360.1 Feature: domain Description: CMP-KDO-Synthetase Location: 1263298-1263997 bp Feature: domain Description: CMP-KDO-Synthetase Location: 1 263298-1 263997 bp Feature: gene Location: 2608612-2609364 bp Ori: ACV69580.1 Feature: domain Description: TauC Location: 2608624-2609359 bp Feature: domain Description: TauC Location: 2608624-2609359 bp Feature: gene Location: 2609697-2610635 bp Ori: ACV69581.1 Feature: domain Description: PBP2_ThiY Location: 2609769-2610405 bp Feature: domain Description: PBP2_ThiY Location: 2609769-261 0405 bp Feature: gene Location: 2610769-2612169 bp Ori: ACV69582.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2611105-2611723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 1 1 05-261 1 723 bp Feature: domain Description: GIIM Note: maturase Location: 2611771-2611990 bp Feature: domain Description: GIIM Note: maturase Location: 261 1 771 -261 1 990 bp Feature: gene Location: 2612232-2612414 bp Feature: gene Location: 2612651-2613820 bp Ori: ACV69584.1 Feature: domain Description: PRK05250 Location: 2612672-2613815 bp Feature: domain Description: PRK05250 Location: 261 2672-261 381 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), rmlA (TIGR01207), Fer4_13 (pfam13370), PseF (TIGR03584), COG5421 (Transposase ), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), TPR (smart00028), MAF_flag10 (pfam01973)
secF (PRK13022), glpX (TIGR00330), TktA (COG0021), lipoyltrans (TIGR00545), COG4715 (Uncharacterized conserved protein, contains Zn finger domain ), HepA (COG0553), SpoT (COG0317), XerC (COG4973), INT_Rci_Hp1_C (cd00796), PRK05431 (seryl-tRNA synthetase; Provisional)
PRK06246 (fumarate hydratase; Provisional), PRK06842 (Fe-S-containing hydro-lyase), PRK12564 (carbamoyl-phosphate synthase small subunit), CMP-KDO-Synthetase (cd02517), TauC (COG0600), PBP2_ThiY (cd13651), PRK05250 (S-adenosylmethionine synthetase; Validated)