myRT

myRT report for GCA_000025185.1_ASM2518v1

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Seq: CP001848.1 Pirellula staleyi DSM 6068, complete genome (6196199 bp)
Overview 1 RT 1: 1399580-1411780 bp 2 RT 2: 4444846-4454273 bp Neighborhood of RT #1 [1399580, 1411780] COG0610 DUF45 CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Neighborhood of RT #2 [4444846, 4454605] YydB YydB DUF4365 RVT-UG5 Piwi_piwi-like_ProArk SIR2_2 Feature: gene Location: 1399580-1402642 bp Ori: ADB15817.1 Feature: domain Description: COG0610 Location: 1399610-1402565 bp Feature: domain Description: COG061 0 Location: 1 39961 0-1 402565 bp Feature: gene Location: 1402642-1403358 bp Ori: ADB15818.1 Feature: domain Description: DUF45 Location: 1402714-1403326 bp Feature: domain Description: DUF45 Location: 1 40271 4-1 403326 bp Feature: gene Location: 1405107-1407935 bp Ori: ADB15819.1 Feature: domain Description: CRISPR_Cas6 Location: 1405563-1406007 bp Feature: domain Description: CRISPR_Cas6 Location: 1 405563-1 406007 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1406193-1406772 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 4061 93-1 406772 bp Feature: domain Description: Cas1_I-II-III Location: 1406976-1407897 bp Feature: domain Description: Cas1 _I-II-III Location: 1 406976-1 407897 bp Feature: gene Location: 1407932-1408204 bp Ori: ADB15820.1 Feature: domain Description: Cas2_I_II_III Location: 1407944-1408136 bp Feature: domain Description: Cas2_I_II_III Location: 1 407944-1 4081 36 bp Feature: gene Location: 1410068-1411780 bp Feature: gene Location: 4444846-4446879 bp Ori: ADB18089.1 Feature: domain Description: YydB Location: 4444954-4445089 bp Feature: domain Description: YydB Location: 4444954-4445089 bp Feature: domain Description: YydB Location: 4446106-4446616 bp Feature: domain Description: YydB Location: 44461 06-444661 6 bp Feature: gene Location: 4446876-4447886 bp Ori: ADB18090.1 Feature: domain Description: DUF4365 Location: 4446903-4447386 bp Feature: domain Description: DUF4365 Location: 4446903-4447386 bp Feature: gene Location: 4448044-4451178 bp Ori: ADB18091.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4448629-4449124 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4448629-44491 24 bp Feature: gene Location: 4451322-4453304 bp Ori: ADB18092.1 Feature: domain Description: Piwi_piwi-like_ProArk Location: 4452300-4453242 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 4452300-4453242 bp Feature: gene Location: 4453292-4454605 bp Ori: ADB18093.1 Feature: domain Description: SIR2_2 Location: 4453784-4454273 bp Feature: domain Description: SIR2_2 Location: 4453784-4454273 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF45 (pfam01863), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), YydB (COG5293), DUF4365 (pfam14280), RVT-UG5, Piwi_piwi-like_ProArk (cd04659)
SIR2_2 (pfam13289)