myRT

myRT report for GCA_000025485.1_ASM2548v1

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Seq: CP001896.1 Allochromatium vinosum DSM 180, complete genome (3526903 bp)
Overview 1 RT 1: 960569-968666 bp 2 RT 2: 3147984-3151179 bp 3 RT 3: 3345126-3350499 bp 4 RT 4: 3483951-3489269 bp Neighborhood of RT #1 [960569, 969031] RVT-GII GIIM DUF3592 Neighborhood of RT #2 [3147984, 3151244] PRK09010 HTH_XRE RVT-Retrons DUF4096 DDE_Tnp_1 Neighborhood of RT #3 [3345126, 3350504] DUF4212 Na_symport_lg RVT-GII GIIM PleD Neighborhood of RT #4 [3483951, 3489269] PemK_toxin RVT-UG7 Tnp_DNA_bind Dimer_Tnp_Tn5 Feature: gene Location: 960569-961234 bp Feature: gene Location: 961299-961520 bp Feature: gene Location: 961900-963255 bp Ori: ADC61776.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962200-962818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962200-96281 8 bp Feature: domain Description: GIIM Note: maturase Location: 962860-963064 bp Feature: domain Description: GIIM Note: maturase Location: 962860-963064 bp Feature: gene Location: 963375-967568 bp Feature: gene Location: 967949-969031 bp Ori: ADC61778.1 Feature: domain Description: DUF3592 Location: 968345-968666 bp Feature: domain Description: DUF3592 Location: 968345-968666 bp Feature: gene Location: 3147984-3148499 bp Ori: ADC63690.1 Feature: domain Description: PRK09010 Location: 3147987-3148497 bp Feature: domain Description: PRK0901 0 Location: 31 47987-31 48497 bp Feature: gene Location: 3149101-3149388 bp Ori: ADC63691.1 Feature: domain Description: HTH_XRE Location: 3149116-3149275 bp Feature: domain Description: HTH_XRE Location: 31 491 1 6-31 49275 bp Feature: gene Location: 3149375-3150307 bp Ori: ADC63692.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3149537-3150038 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 49537-31 50038 bp Feature: gene Location: 3150404-3150697 bp Ori: ADC63693.1 Feature: domain Description: DUF4096 Location: 3150449-3150671 bp Feature: domain Description: DUF4096 Location: 31 50449-31 50671 bp Feature: gene Location: 3150699-3151244 bp Ori: ADC63693.1 Feature: domain Description: DDE_Tnp_1 Location: 3150723-3151179 bp Feature: domain Description: DDE_Tnp_1 Location: 31 50723-31 51 1 79 bp Feature: gene Location: 3345126-3345383 bp Ori: ADC63863.1 Feature: domain Description: DUF4212 Location: 3345147-3345372 bp Feature: domain Description: DUF421 2 Location: 33451 47-3345372 bp Feature: gene Location: 3345396-3347195 bp Ori: ADC63864.1 Feature: domain Description: Na_symport_lg Location: 3345420-3347166 bp Feature: domain Description: Na_symport_lg Location: 3345420-33471 66 bp Feature: gene Location: 3347636-3348997 bp Ori: ADC63865.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3347966-3348581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3347966-3348581 bp Feature: domain Description: GIIM Note: maturase Location: 3348635-3348839 bp Feature: domain Description: GIIM Note: maturase Location: 3348635-3348839 bp Feature: gene Location: 3349200-3349346 bp Feature: gene Location: 3349476-3350504 bp Ori: ADC63867.1 Feature: domain Description: PleD Location: 3349953-3350499 bp Feature: domain Description: PleD Location: 3349953-3350499 bp Feature: gene Location: 3483951-3484274 bp Ori: ADC63992.1 Feature: domain Description: PemK_toxin Location: 3483957-3484257 bp Feature: domain Description: PemK_toxin Location: 3483957-3484257 bp Feature: gene Location: 3484494-3485246 bp Feature: gene Location: 3485243-3486913 bp Ori: ADC63994.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3485702-3486122 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3485702-34861 22 bp Feature: gene Location: 3486974-3488305 bp Ori: ADC63995.1 Feature: domain Description: Tnp_DNA_bind Location: 3486983-3487148 bp Feature: domain Description: Tnp_DNA_bind Location: 3486983-34871 48 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 3488012-3488294 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 348801 2-3488294 bp Feature: gene Location: 3488388-3489269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF3592 (pfam12158), PRK09010 (single-stranded DNA-binding protein; Provisional), HTH_XRE (smart00530), RVT-Retrons, DUF4096 (pfam13340), DDE_Tnp_1 (pfam01609), DUF4212 (pfam13937), Na_symport_lg (TIGR03648)
PleD (COG3706), PemK_toxin (pfam02452), RVT-UG7, Tnp_DNA_bind (pfam14706), Dimer_Tnp_Tn5 (pfam02281)