myRT

myRT report for GCA_000025645.1_ASM2564v1

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Seq: CP001936.1 Thermoanaerobacter italicus Ab9, complete genome (2451061 bp)
Overview 1 RT 1: 97583-103145 bp 2 RT 2: 119677-125398 bp 3 RT 3: 604445-608021 bp 4 RT 4: 716905-725548 bp 5 RT 5: 809807-814349 bp 6 RT 6: 1393708-1403631 bp 7 RT 7: 1561835-1568208 bp 8 RT 8: 1935060-1939875 bp 9 RT 9: 1975588-1980520 bp 10 RT 10: 2294041-2298599 bp 11 RT 11: 2441301-2447479 bp Neighborhood of RT #1 [97583, 103174] Sulf_transp TRX_reduct KOG0910 RVT-GII GIIM NagC Adenine_glyco Neighborhood of RT #2 [119677, 125499] ksgA RVT-GII GIIM PRK13782 SLH SLH SLH PrcB_C Neighborhood of RT #3 [604445, 608021] RVT-GII GIIM Neighborhood of RT #4 [716905, 725601] EH_Signature EH_Signature HepA RVT-UG19 Piwi_piwi-like_ProArk UDP_AE_SDR_e Neighborhood of RT #5 [809807, 814369] PQQ_ABC_repeats PQQ_ABC_repeats DUF4364 RVT-GII GIIM SASP QueG Neighborhood of RT #6 [1393708, 1403645] Sigma_reg_N Sigma_reg_C Cu_amine_oxidN1 CYK3 RVT-GII GIIM Phage_int_SAM_3 INT_ICEBs1_C_like RVT-GII GIIM AmiC SPOR Neighborhood of RT #7 [1561835, 1568222] PRK01286 SecG RVT-GII GIIM eno PRK05434 Neighborhood of RT #8 [1935060, 1940045] COG3547 COG3547 RVT-GII GIIM Neighborhood of RT #9 [1975588, 1980588] spore_cwlD LysM LysM LysM PG_binding_1 LysM RVT-GII GIIM TRX_reduct Coat_F Neighborhood of RT #10 [2294041, 2298646] PIN_VapC-like RVT-GII GIIM PRK10712 fruA Neighborhood of RT #11 [2441301, 2447505] nucleoid_noc Nudix_Hydrolase_11 RVT-GII GIIM RsmG PRK05192 Feature: gene Location: 97583-98116 bp Ori: ADD01406.1 Feature: domain Description: Sulf_transp Location: 97604-98084 bp Feature: domain Description: Sulf_transp Location: 97604-98084 bp Feature: gene Location: 98163-99386 bp Ori: ADD01407.1 Feature: domain Description: TRX_reduct Location: 98190-99090 bp Feature: domain Description: TRX_reduct Location: 981 90-99090 bp Feature: domain Description: KOG0910 Location: 99195-99357 bp Feature: domain Description: KOG091 0 Location: 991 95-99357 bp Feature: gene Location: 100088-101500 bp Ori: ADD01408.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100436-101054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 00436-1 01 054 bp Feature: domain Description: GIIM Note: maturase Location: 101105-101330 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 1 05-1 01 330 bp Feature: gene Location: 101644-102591 bp Ori: ADD01409.1 Feature: domain Description: NagC Location: 101659-102583 bp Feature: domain Description: NagC Location: 1 01 659-1 02583 bp Feature: gene Location: 102602-103174 bp Ori: ADD01410.1 Feature: domain Description: Adenine_glyco Location: 102620-103145 bp Feature: domain Description: Adenine_glyco Location: 1 02620-1 031 45 bp Feature: gene Location: 119677-120495 bp Ori: ADD01429.1 Feature: domain Description: ksgA Location: 119683-120481 bp Feature: domain Description: ksgA Location: 1 1 9683-1 20481 bp Feature: gene Location: 120568-121626 bp Feature: gene Location: 122084-123496 bp Ori: ADD01431.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122432-123050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 22432-1 23050 bp Feature: domain Description: GIIM Note: maturase Location: 123101-123326 bp Feature: domain Description: GIIM Note: maturase Location: 1 231 01 -1 23326 bp Feature: gene Location: 123578-123814 bp Ori: ADD01432.1 Feature: domain Description: PRK13782 Location: 123626-123785 bp Feature: domain Description: PRK1 3782 Location: 1 23626-1 23785 bp Feature: gene Location: 124231-125499 bp Ori: ADD01433.1 Feature: domain Description: SLH Location: 124327-124453 bp Feature: domain Description: SLH Location: 1 24327-1 24453 bp Feature: domain Description: SLH Location: 124546-124645 bp Feature: domain Description: SLH Location: 1 24546-1 24645 bp Feature: domain Description: SLH Location: 124714-124843 bp Feature: domain Description: SLH Location: 1 2471 4-1 24843 bp Feature: domain Description: PrcB_C Location: 125230-125398 bp Feature: domain Description: PrcB_C Location: 1 25230-1 25398 bp Feature: gene Location: 604445-604561 bp Feature: gene Location: 604597-604782 bp Feature: gene Location: 605241-606653 bp Ori: ADD01861.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 605589-606207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 605589-606207 bp Feature: domain Description: GIIM Note: maturase Location: 606258-606483 bp Feature: domain Description: GIIM Note: maturase Location: 606258-606483 bp Feature: gene Location: 606771-606965 bp Feature: gene Location: 607044-608021 bp Feature: gene Location: 716905-718083 bp Ori: ADD01959.1 Feature: domain Description: EH_Signature Location: 717679-717814 bp Feature: domain Description: EH_Signature Location: 71 7679-71 781 4 bp Feature: domain Description: EH_Signature Location: 717829-718042 bp Feature: domain Description: EH_Signature Location: 71 7829-71 8042 bp Feature: gene Location: 718080-720875 bp Ori: ADD01960.1 Feature: domain Description: HepA Location: 718953-720804 bp Feature: domain Description: HepA Location: 71 8953-720804 bp Feature: gene Location: 721965-724112 bp Ori: ADD01961.1 Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 722328-722835 bp Feature: RT Description: RVT-UG1 9 Note: UG1 9 RT Location: 722328-722835 bp Feature: gene Location: 724148-724369 bp Ori: ADD01962.1 Feature: domain Description: Piwi_piwi-like_ProArk Location: 724163-724367 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 7241 63-724367 bp Feature: gene Location: 724735-725601 bp Ori: ADD01963.1 Feature: domain Description: UDP_AE_SDR_e Location: 724780-725548 bp Feature: domain Description: UDP_AE_SDR_e Location: 724780-725548 bp Feature: gene Location: 809807-810724 bp Ori: ADD02030.1 Feature: domain Description: PQQ_ABC_repeats Location: 809975-810353 bp Feature: domain Description: PQQ_ABC_repeats Location: 809975-81 0353 bp Feature: domain Description: PQQ_ABC_repeats Location: 810395-810722 bp Feature: domain Description: PQQ_ABC_repeats Location: 81 0395-81 0722 bp Feature: gene Location: 810711-811226 bp Ori: ADD02031.1 Feature: domain Description: DUF4364 Location: 810744-811215 bp Feature: domain Description: DUF4364 Location: 81 0744-81 1 21 5 bp Feature: gene Location: 811749-813161 bp Ori: ADD02032.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 812097-812715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 2097-81 271 5 bp Feature: domain Description: GIIM Note: maturase Location: 812766-812991 bp Feature: domain Description: GIIM Note: maturase Location: 81 2766-81 2991 bp Feature: gene Location: 813243-813542 bp Ori: ADD02033.1 Feature: domain Description: SASP Location: 813276-813453 bp Feature: domain Description: SASP Location: 81 3276-81 3453 bp Feature: gene Location: 813680-814369 bp Ori: ADD02034.1 Feature: domain Description: QueG Location: 813803-814349 bp Feature: domain Description: QueG Location: 81 3803-81 4349 bp Feature: gene Location: 1393708-1394676 bp Ori: ADD02621.1 Feature: domain Description: Sigma_reg_N Location: 1393759-1394023 bp Feature: domain Description: Sigma_reg_N Location: 1 393759-1 394023 bp Feature: domain Description: Sigma_reg_C Location: 1394263-1394656 bp Feature: domain Description: Sigma_reg_C Location: 1 394263-1 394656 bp Feature: gene Location: 1394720-1395988 bp Ori: ADD02622.1 Feature: domain Description: Cu_amine_oxidN1 Location: 1394783-1394897 bp Feature: domain Description: Cu_amine_oxidN1 Location: 1 394783-1 394897 bp Feature: domain Description: CYK3 Location: 1395491-1395959 bp Feature: domain Description: CYK3 Location: 1 395491 -1 395959 bp Feature: gene Location: 1396798-1398210 bp Ori: ADD02623.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1397146-1397764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3971 46-1 397764 bp Feature: domain Description: GIIM Note: maturase Location: 1397815-1398040 bp Feature: domain Description: GIIM Note: maturase Location: 1 39781 5-1 398040 bp Feature: gene Location: 1398270-1399466 bp Ori: ADD02624.1 Feature: domain Description: Phage_int_SAM_3 Location: 1398483-1398654 bp Feature: domain Description: Phage_int_SAM_3 Location: 1 398483-1 398654 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1398840-1399386 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 1 398840-1 399386 bp Feature: gene Location: 1399641-1400342 bp Feature: gene Location: 1400425-1401837 bp Ori: ADD02626.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1400773-1401391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 400773-1 401 391 bp Feature: domain Description: GIIM Note: maturase Location: 1401442-1401667 bp Feature: domain Description: GIIM Note: maturase Location: 1 401 442-1 401 667 bp Feature: gene Location: 1402302-1402856 bp Feature: gene Location: 1402935-1403645 bp Ori: ADD02628.1 Feature: domain Description: AmiC Location: 1402941-1403487 bp Feature: domain Description: AmiC Location: 1 402941 -1 403487 bp Feature: domain Description: SPOR Location: 1403538-1403631 bp Feature: domain Description: SPOR Location: 1 403538-1 403631 bp Feature: gene Location: 1561835-1562836 bp Ori: ADD02801.1 Feature: domain Description: PRK01286 Location: 1561880-1562831 bp Feature: domain Description: PRK01 286 Location: 1 561 880-1 562831 bp Feature: gene Location: 1562920-1563159 bp Ori: ADD02802.1 Feature: domain Description: SecG Location: 1562935-1563148 bp Feature: domain Description: SecG Location: 1 562935-1 5631 48 bp Feature: gene Location: 1563499-1564911 bp Ori: ADD02803.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1563847-1564465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 563847-1 564465 bp Feature: domain Description: GIIM Note: maturase Location: 1564516-1564741 bp Feature: domain Description: GIIM Note: maturase Location: 1 56451 6-1 564741 bp Feature: gene Location: 1565363-1566652 bp Ori: ADD02804.1 Feature: domain Description: eno Location: 1565366-1566644 bp Feature: domain Description: eno Location: 1 565366-1 566644 bp Feature: gene Location: 1566678-1568222 bp Ori: ADD02805.1 Feature: domain Description: PRK05434 Location: 1566687-1568208 bp Feature: domain Description: PRK05434 Location: 1 566687-1 568208 bp Feature: gene Location: 1935060-1936343 bp Ori: ADD03128.1 Feature: domain Description: COG3547 Location: 1935114-1935732 bp Feature: domain Description: COG3547 Location: 1 9351 1 4-1 935732 bp Feature: domain Description: COG3547 Location: 1935837-1936176 bp Feature: domain Description: COG3547 Location: 1 935837-1 9361 76 bp Feature: gene Location: 1936496-1938415 bp Feature: gene Location: 1938633-1940045 bp Ori: ADD03130.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1938981-1939599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 938981 -1 939599 bp Feature: domain Description: GIIM Note: maturase Location: 1939650-1939875 bp Feature: domain Description: GIIM Note: maturase Location: 1 939650-1 939875 bp Feature: gene Location: 1975588-1976247 bp Ori: ADD03161.1 Feature: domain Description: spore_cwlD Location: 1975684-1976227 bp Feature: domain Description: spore_cwlD Location: 1 975684-1 976227 bp Feature: gene Location: 1976374-1977384 bp Ori: ADD03162.1 Feature: domain Description: LysM Location: 1976395-1976524 bp Feature: domain Description: LysM Location: 1 976395-1 976524 bp Feature: domain Description: LysM Location: 1976542-1976671 bp Feature: domain Description: LysM Location: 1 976542-1 976671 bp Feature: domain Description: LysM Location: 1976743-1976875 bp Feature: domain Description: LysM Location: 1 976743-1 976875 bp Feature: domain Description: PG_binding_1 Location: 1976935-1977097 bp Feature: domain Description: PG_binding_1 Location: 1 976935-1 977097 bp Feature: domain Description: LysM Location: 1977142-1977277 bp Feature: domain Description: LysM Location: 1 9771 42-1 977277 bp Feature: gene Location: 1977444-1978856 bp Ori: ADD03163.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1977792-1978410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 977792-1 97841 0 bp Feature: domain Description: GIIM Note: maturase Location: 1978461-1978686 bp Feature: domain Description: GIIM Note: maturase Location: 1 978461 -1 978686 bp Feature: gene Location: 1979304-1980218 bp Ori: ADD03164.1 Feature: domain Description: TRX_reduct Location: 1979313-1980201 bp Feature: domain Description: TRX_reduct Location: 1 97931 3-1 980201 bp Feature: gene Location: 1980313-1980588 bp Ori: ADD03165.1 Feature: domain Description: Coat_F Location: 1980337-1980520 bp Feature: domain Description: Coat_F Location: 1 980337-1 980520 bp Feature: gene Location: 2294041-2294304 bp Feature: gene Location: 2294294-2294737 bp Ori: ADD03461.1 Feature: domain Description: PIN_VapC-like Location: 2294321-2294714 bp Feature: domain Description: PIN_VapC-like Location: 2294321 -229471 4 bp Feature: gene Location: 2294928-2296340 bp Ori: ADD03462.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2295276-2295894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2295276-2295894 bp Feature: domain Description: GIIM Note: maturase Location: 2295945-2296170 bp Feature: domain Description: GIIM Note: maturase Location: 2295945-22961 70 bp Feature: gene Location: 2296809-2298167 bp Ori: ADD03463.1 Feature: domain Description: PRK10712 Location: 2296815-2298156 bp Feature: domain Description: PRK1 071 2 Location: 229681 5-22981 56 bp Feature: gene Location: 2298191-2298646 bp Ori: ADD03464.1 Feature: domain Description: fruA Location: 2298221-2298599 bp Feature: domain Description: fruA Location: 2298221 -2298599 bp Feature: gene Location: 2441301-2442107 bp Ori: ADD03590.1 Feature: domain Description: nucleoid_noc Location: 2441325-2442102 bp Feature: domain Description: nucleoid_noc Location: 2441 325-24421 02 bp Feature: gene Location: 2442210-2442656 bp Ori: ADD03591.1 Feature: domain Description: Nudix_Hydrolase_11 Location: 2442243-2442588 bp Feature: domain Description: Nudix_Hydrolase_1 1 Location: 2442243-2442588 bp Feature: gene Location: 2442815-2444227 bp Ori: ADD03592.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2443163-2443781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24431 63-2443781 bp Feature: domain Description: GIIM Note: maturase Location: 2443832-2444057 bp Feature: domain Description: GIIM Note: maturase Location: 2443832-2444057 bp Feature: gene Location: 2444901-2445623 bp Ori: ADD03593.1 Feature: domain Description: RsmG Location: 2444925-2445564 bp Feature: domain Description: RsmG Location: 2444925-2445564 bp Feature: gene Location: 2445604-2447505 bp Ori: ADD03594.1 Feature: domain Description: PRK05192 Location: 2445622-2447479 bp Feature: domain Description: PRK051 92 Location: 2445622-2447479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sulf_transp (pfam04143), TRX_reduct (TIGR01292), KOG0910 (KOG0910, Thioredoxin-like protein ), RVT-GII, GIIM (pfam08388), NagC (COG1940), Adenine_glyco (pfam03352), ksgA (TIGR00755), PRK13782 (HPr family phosphocarrier protein), SLH (pfam00395)
PrcB_C (pfam14343), EH_Signature (pfam15611), HepA (COG0553), RVT-UG19, Piwi_piwi-like_ProArk (cd04659), UDP_AE_SDR_e (cd05256), PQQ_ABC_repeats (TIGR03866), DUF4364 (pfam14277), SASP (pfam00269), QueG (COG1600)
Sigma_reg_N (pfam13800), Sigma_reg_C (pfam13791), Cu_amine_oxidN1 (pfam07833), CYK3 (COG5279), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), AmiC (COG0860), SPOR (pfam05036), PRK01286 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), SecG (pfam03840)
eno (TIGR01060), PRK05434 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase), COG3547 (Transposase ), spore_cwlD (TIGR02883), LysM (smart00257), PG_binding_1 (pfam01471), Coat_F (pfam07875), PIN_VapC-like (cd18715), PRK10712 (PTS system fructose-specific transporter subunits IIBC; Provisional), fruA (TIGR00848)
nucleoid_noc (TIGR04285), Nudix_Hydrolase_11 (cd04669), RsmG (COG0357), PRK05192 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG)