myRT

myRT report for GCA_000025985.1_ASM2598v1

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Seq: CR626927.1 Bacteroides fragilis NCTC 9343, complete genome (5205140 bp)
Overview 1 RT 1: 1193352-1202310 bp 2 RT 2: 2464770-2469768 bp 3 RT 3: 3878542-3885273 bp 4 RT 4: 4787058-4792063 bp Neighborhood of RT #1 [1193352, 1202318] GlnA3 RVT-Retrons rpsA RNase_Z Neighborhood of RT #2 [2464770, 2469794] AAT_like Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-Retrons HTH_17 Neighborhood of RT #3 [3878542, 3885320] SLATT_5 COG2865 RVT-UG5 Gph LbH_MAT_GAT Neighborhood of RT #4 [4787058, 4792063] NHL 7WD40 RVT_N RVT-GII HTH_28 Feature: gene Location: 1193352-1195541 bp Ori: CAH06697.1 Gene: glnA Feature: domain Description: GlnA3 Location: 1193427-1195539 bp Feature: domain Description: GlnA3 Location: 1 1 93427-1 1 95539 bp Feature: gene Location: 1195844-1198000 bp Feature: gene Location: 1198207-1199319 bp Ori: CAH06699.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1198522-1199071 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 98522-1 1 99071 bp Feature: gene Location: 1199461-1201254 bp Ori: CAH06700.1 Gene: rpsA Feature: domain Description: rpsA Location: 1199539-1201147 bp Feature: domain Description: rpsA Location: 1 1 99539-1 201 1 47 bp Feature: gene Location: 1201404-1202318 bp Ori: CAH06701.1 Feature: domain Description: RNase_Z Location: 1201419-1202310 bp Feature: domain Description: RNase_Z Location: 1 201 41 9-1 20231 0 bp Feature: gene Location: 2464770-2466086 bp Ori: CAH07805.1 Feature: domain Description: AAT_like Location: 2464911-2466054 bp Feature: domain Description: AAT_like Location: 246491 1 -2466054 bp Feature: gene Location: 2466550-2467800 bp Ori: CAH07806.1 Feature: domain Description: Arm-DNA-bind_5 Location: 2466616-2466877 bp Feature: domain Description: Arm-DNA-bind_5 Location: 246661 6-2466877 bp Feature: domain Description: Phage_int_SAM_5 Location: 2466916-2467219 bp Feature: domain Description: Phage_int_SAM_5 Location: 246691 6-246721 9 bp Feature: domain Description: INTN1_C_like Location: 2467270-2467759 bp Feature: domain Description: INTN1 _C_like Location: 2467270-2467759 bp Feature: gene Location: 2467809-2468657 bp Ori: CAH07807.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2467968-2468490 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2467968-2468490 bp Feature: gene Location: 2468681-2468962 bp Feature: gene Location: 2469501-2469794 bp Ori: CAH07809.1 Feature: domain Description: HTH_17 Location: 2469624-2469768 bp Feature: domain Description: HTH_1 7 Location: 2469624-2469768 bp Feature: gene Location: 3878542-3879270 bp Ori: CAH08989.1 Feature: domain Description: SLATT_5 Location: 3878668-3879235 bp Feature: domain Description: SLATT_5 Location: 3878668-3879235 bp Feature: gene Location: 3879431-3880810 bp Ori: CAH08990.1 Feature: domain Description: COG2865 Location: 3879443-3880799 bp Feature: domain Description: COG2865 Location: 3879443-3880799 bp Feature: gene Location: 3880815-3883817 bp Ori: CAH08991.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3881343-3881829 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3881 343-3881 829 bp Feature: gene Location: 3884081-3884719 bp Ori: CAH08992.1 Feature: domain Description: Gph Location: 3884084-3884711 bp Feature: domain Description: Gph Location: 3884084-388471 1 bp Feature: gene Location: 3884697-3885320 bp Ori: CAH08993.1 Feature: domain Description: LbH_MAT_GAT Location: 3884736-3885273 bp Feature: domain Description: LbH_MAT_GAT Location: 3884736-3885273 bp Feature: gene Location: 4787058-4788425 bp Feature: gene Location: 4788422-4789477 bp Ori: CAH09739.1 Feature: domain Description: NHL Location: 4788644-4789010 bp Feature: domain Description: NHL Location: 4788644-478901 0 bp Feature: domain Description: 7WD40 Location: 4789061-4789442 bp Feature: domain Description: 7WD40 Location: 4789061 -4789442 bp Feature: gene Location: 4790225-4790674 bp Feature: domain Description: RVT_N Location: 4790297-4790528 bp Feature: domain Description: RVT_N Location: 4790297-4790528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4790582-4790651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4790582-4790651 bp Feature: gene Location: 4790943-4791260 bp Feature: domain Description: HTH_28 Location: 4790997-4791144 bp Feature: domain Description: HTH_28 Location: 4790997-4791 1 44 bp Feature: gene Location: 4791728-4792063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651), AAT_like (cd00609), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728), SLATT_5 (pfam18160)
COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-UG5, Gph (COG0546), LbH_MAT_GAT (cd03357), NHL (pfam01436), 7WD40 (sd00039), RVT_N (pfam13655), RVT-GII, HTH_28 (pfam13518)