myRT

myRT report for GCA_000027085.1_ASM2708v1

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Seq: FN543502.1 Citrobacter rodentium ICC168, complete genome (5346659 bp)
Overview 1 RT 1: 2025282-2030672 bp 2 RT 2: 3380362-3386735 bp 3 RT 3: 3818416-3826606 bp Neighborhood of RT #1 [2025282, 2030672] aspS_bact PRK11440 RVT-GII RVT-GII group_II_RT_mat Neighborhood of RT #2 [3380362, 3386749] groES groEL RVT_N RVT-GII GIIM HNHc DUF4156 YjeJ Neighborhood of RT #3 [3818416, 3826608] Nterm_IS4 DDE_Tnp_1 PRK15456 RVT-GII Intron_maturas2 HNHc PRK09010 uvrA Feature: gene Location: 2025282-2027054 bp Ori: CBG88661.1 Gene: aspS Feature: domain Description: aspS_bact Location: 2025285-2027040 bp Feature: domain Description: aspS_bact Location: 2025285-2027040 bp Feature: gene Location: 2027281-2027865 bp Ori: CBG88662.1 Feature: domain Description: PRK11440 Location: 2027299-2027860 bp Feature: domain Description: PRK1 1 440 Location: 2027299-2027860 bp Feature: gene Location: 2029000-2029320 bp Gene: retA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2029096-2029318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2029096-202931 8 bp Feature: gene Location: 2028606-2029007 bp Gene: retA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2028612-2028978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202861 2-2028978 bp Feature: gene Location: 2028247-2028606 bp Gene: retA Feature: domain Description: group_II_RT_mat Note: maturase Location: 2028259-2028475 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2028259-2028475 bp Feature: gene Location: 2029464-2030672 bp Feature: gene Location: 3380362-3380655 bp Ori: CBG89925.1 Gene: groS Feature: domain Description: groES Location: 3380365-3380650 bp Feature: domain Description: groES Location: 3380365-3380650 bp Feature: gene Location: 3380699-3382345 bp Ori: CBG89926.1 Gene: groL Feature: domain Description: groEL Location: 3380705-3382331 bp Feature: domain Description: groEL Location: 3380705-3382331 bp Feature: gene Location: 3383365-3385149 bp Ori: CBG89927.1 Feature: domain Description: RVT_N Location: 3383500-3383734 bp Feature: domain Description: RVT_N Location: 3383500-3383734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3383788-3384433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3383788-3384433 bp Feature: domain Description: GIIM Note: maturase Location: 3384487-3384718 bp Feature: domain Description: GIIM Note: maturase Location: 3384487-338471 8 bp Feature: domain Description: HNHc Note: nucleases Location: 3384940-3385081 bp Feature: domain Description: HNHc Note: nucleases Location: 3384940-3385081 bp Feature: gene Location: 3385394-3385765 bp Ori: CBG89928.1 Feature: domain Description: DUF4156 Location: 3385481-3385757 bp Feature: domain Description: DUF41 56 Location: 3385481 -3385757 bp Feature: gene Location: 3385886-3386749 bp Ori: CBG89929.1 Feature: domain Description: YjeJ Location: 3385889-3386735 bp Feature: domain Description: YjeJ Location: 3385889-3386735 bp Feature: gene Location: 3818416-3819588 bp Feature: domain Description: Nterm_IS4 Location: 3818419-3818599 bp Feature: domain Description: Nterm_IS4 Location: 381 841 9-381 8599 bp Feature: domain Description: DDE_Tnp_1 Location: 3818650-3819331 bp Feature: domain Description: DDE_Tnp_1 Location: 381 8650-381 9331 bp Feature: gene Location: 3819712-3820143 bp Ori: CBG90336.1 Gene: uspG Feature: domain Description: PRK15456 Location: 3819715-3820141 bp Feature: domain Description: PRK1 5456 Location: 381 971 5-38201 41 bp Feature: gene Location: 3820507-3822387 bp Ori: CBG90337.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3820795-3821632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3820795-3821 632 bp Feature: domain Description: Intron_maturas2 Location: 3821746-3822022 bp Feature: domain Description: Intron_maturas2 Location: 3821 746-3822022 bp Feature: domain Description: HNHc Note: nucleases Location: 3822163-3822340 bp Feature: domain Description: HNHc Note: nucleases Location: 38221 63-3822340 bp Feature: gene Location: 3823002-3823532 bp Ori: CBG90338.1 Gene: ssb Feature: domain Description: PRK09010 Location: 3823005-3823530 bp Feature: domain Description: PRK0901 0 Location: 3823005-3823530 bp Feature: gene Location: 3823786-3826608 bp Ori: CBG90339.1 Gene: uvrA Feature: domain Description: uvrA Location: 3823789-3826606 bp Feature: domain Description: uvrA Location: 3823789-3826606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT aspS_bact (TIGR00459), PRK11440 (putative hydrolase; Provisional), RVT-GII, group_II_RT_mat (TIGR04416), groES (PRK14533), groEL (PRK12852), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507), DUF4156 (pfam13698)
YjeJ (pfam15922), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), PRK15456 (universal stress protein UspG; Provisional), Intron_maturas2 (pfam01348), PRK09010 (single-stranded DNA-binding protein; Provisional), uvrA (PRK00349)