myRT

myRT report for GCA_000048665.1_ASM4866v1

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Seq: CR628337.1 Legionella pneumophila str. Lens complete genome (3345687 bp)
Overview 1 RT 1: 79096-86729 bp 2 RT 2: 218758-224090 bp 3 RT 3: 1146247-1151700 bp Neighborhood of RT #1 [79096, 86737] DUF5338 RVT-UG5 PRK05764 PRK05298 Neighborhood of RT #2 [218758, 224104] SidC_N RVT-UG18 DUF772 TIGR03491 Neighborhood of RT #3 [1146247, 1151700] Phage_int_SAM_2 RVT-Retrons Trypsin_2 conj_TOL_TraD Feature: gene Location: 79096-79236 bp Feature: gene Location: 79418-79783 bp Feature: domain Description: DUF5338 Location: 79427-79634 bp Feature: domain Description: DUF5338 Location: 79427-79634 bp Feature: gene Location: 80088-83207 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 80640-81132 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 80640-81 1 32 bp Feature: gene Location: 83521-84699 bp Feature: domain Description: PRK05764 Location: 83533-84694 bp Feature: domain Description: PRK05764 Location: 83533-84694 bp Feature: gene Location: 84746-86737 bp Feature: domain Description: PRK05298 Location: 84755-86729 bp Feature: domain Description: PRK05298 Location: 84755-86729 bp Feature: gene Location: 218758-220989 bp Feature: domain Description: SidC_N Location: 218767-220096 bp Feature: domain Description: SidC_N Location: 21 8767-220096 bp Feature: gene Location: 221031-221240 bp Feature: gene Location: 221304-222017 bp Feature: RT Description: RVT-UG18 Note: UG18 RT Location: 221595-221958 bp Feature: RT Description: RVT-UG1 8 Note: UG1 8 RT Location: 221 595-221 958 bp Feature: gene Location: 222102-223523 bp Feature: domain Description: DUF772 Location: 222294-222474 bp Feature: domain Description: DUF772 Location: 222294-222474 bp Feature: gene Location: 223610-224104 bp Feature: domain Description: TIGR03491 Location: 223646-224090 bp Feature: domain Description: TIGR03491 Location: 223646-224090 bp Feature: gene Location: 1146247-1147053 bp Feature: domain Description: Phage_int_SAM_2 Location: 1146298-1146505 bp Feature: domain Description: Phage_int_SAM_2 Location: 1 1 46298-1 1 46505 bp Feature: gene Location: 1147077-1147304 bp Feature: gene Location: 1147633-1149258 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1147762-1148365 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 47762-1 1 48365 bp Feature: domain Description: Trypsin_2 Location: 1148749-1149169 bp Feature: domain Description: Trypsin_2 Location: 1 1 48749-1 1 491 69 bp Feature: gene Location: 1149440-1151374 bp Feature: domain Description: conj_TOL_TraD Location: 1149458-1151366 bp Feature: domain Description: conj_TOL_TraD Location: 1 1 49458-1 1 51 366 bp Feature: gene Location: 1151371-1151700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5338 (pfam17273), RVT-UG5, PRK05764 (aspartate aminotransferase; Provisional), PRK05298 (excinuclease ABC subunit UvrB), SidC_N (pfam18219), RVT-UG18, DUF772 (pfam05598), TIGR03491 (RecB family nuclease, putative, TM0106 family), Phage_int_SAM_2 (pfam12834), RVT-Retrons
Trypsin_2 (pfam13365), conj_TOL_TraD (TIGR03754)