myRT

myRT report for GCA_000067165.1_ASM6716v1

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Seq: AM746676.1 Sorangium cellulosum 'So ce 56' complete genome (13033779 bp)
Overview 1 RT 1: 1028846-1033895 bp 2 RT 2: 2587298-2599219 bp 3 RT 3: 3615275-3623683 bp 4 RT 4: 7800245-7809166 bp 5 RT 5: 8807083-8814669 bp 6 RT 6: 8901802-8913087 bp 7 RT 7: 9203697-9211253 bp 8 RT 8: 9230543-9236046 bp 9 RT 9: 12911814-12919749 bp Neighborhood of RT #1 [1028846, 1033933] RVT-GII TMR_SDR_a Neighborhood of RT #2 [2587298, 2601477] RVT-Retrons SWIM KOG0296 WD40 WD40 HEAT_2 HEAT HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT HEAT_2 HEAT_2 HEAT_2 Neighborhood of RT #3 [3615275, 3623683] SWIM RVT-Retrons SBBP SBBP Neighborhood of RT #4 [7800245, 7809174] Y2_Tnp RVT-GII DUF3556 Neighborhood of RT #5 [8807083, 8814782] STKc_PknB_like pfam13191 PRK13007 RVT-GII R2K_2 PAS STAS_RsbR_RsbS_like Neighborhood of RT #6 [8901802, 8913161] DEAH_box_HrpA M4_TLP Stig1 YfaP RVT-GII PEPCTERM_chp_1 Metallophos_2 Neighborhood of RT #7 [9203697, 9211312] HTH_28 Tra5 HTH_Tnp_1 HTH_Tnp_1 RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #8 [9230543, 9236099] RpoE RibD_C RVT-GII DUF1287 Haem_oxygenas_2 Neighborhood of RT #9 [12911814, 12919749] RVT-GII Trypsin_2 Feature: gene Location: 1028846-1028986 bp Feature: gene Location: 1029053-1029724 bp Feature: gene Location: 1030462-1031781 bp Ori: CAN90886.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1030744-1031422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 030744-1 031 422 bp Feature: gene Location: 1031887-1033032 bp Feature: gene Location: 1033082-1033933 bp Ori: CAN90888.1 Feature: domain Description: TMR_SDR_a Location: 1033088-1033895 bp Feature: domain Description: TMR_SDR_a Location: 1 033088-1 033895 bp Feature: gene Location: 2587298-2588791 bp Feature: gene Location: 2589018-2590028 bp Feature: gene Location: 2590834-2592336 bp Ori: CAN92072.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2591404-2592055 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2591 404-2592055 bp Feature: gene Location: 2592723-2594612 bp Ori: CAN92073.1 Feature: domain Description: SWIM Location: 2594226-2594310 bp Feature: domain Description: SWIM Location: 2594226-259431 0 bp Feature: gene Location: 2592814-2601477 bp Ori: CAN92074.1 Feature: domain Description: KOG0296 Location: 2592958-2593225 bp Feature: domain Description: KOG0296 Location: 2592958-2593225 bp Feature: domain Description: WD40 Location: 2593300-2593375 bp Feature: domain Description: WD40 Location: 2593300-2593375 bp Feature: domain Description: WD40 Location: 2593402-2593501 bp Feature: domain Description: WD40 Location: 2593402-2593501 bp Feature: domain Description: HEAT_2 Location: 2593921-2594065 bp Feature: domain Description: HEAT_2 Location: 2593921 -2594065 bp Feature: domain Description: HEAT Location: 2594107-2594173 bp Feature: domain Description: HEAT Location: 25941 07-25941 73 bp Feature: domain Description: HEAT_2 Location: 2594311-2594536 bp Feature: domain Description: HEAT_2 Location: 259431 1 -2594536 bp Feature: domain Description: HEAT_2 Location: 2594794-2595043 bp Feature: domain Description: HEAT_2 Location: 2594794-2595043 bp Feature: domain Description: HEAT_2 Location: 2595172-2595253 bp Feature: domain Description: HEAT_2 Location: 25951 72-2595253 bp Feature: domain Description: HEAT_2 Location: 2595298-2595496 bp Feature: domain Description: HEAT_2 Location: 2595298-2595496 bp Feature: domain Description: HEAT_2 Location: 2595874-2596000 bp Feature: domain Description: HEAT_2 Location: 2595874-2596000 bp Feature: domain Description: HEAT_2 Location: 2596030-2596219 bp Feature: domain Description: HEAT_2 Location: 2596030-259621 9 bp Feature: domain Description: HEAT_2 Location: 2596909-2597068 bp Feature: domain Description: HEAT_2 Location: 2596909-2597068 bp Feature: domain Description: HEAT_2 Location: 2597107-2597323 bp Feature: domain Description: HEAT_2 Location: 25971 07-2597323 bp Feature: domain Description: HEAT_2 Location: 2597362-2597614 bp Feature: domain Description: HEAT_2 Location: 2597362-259761 4 bp Feature: domain Description: HEAT Location: 2597656-2597722 bp Feature: domain Description: HEAT Location: 2597656-2597722 bp Feature: domain Description: HEAT_2 Location: 2597773-2597953 bp Feature: domain Description: HEAT_2 Location: 2597773-2597953 bp Feature: domain Description: HEAT_2 Location: 2598229-2598448 bp Feature: domain Description: HEAT_2 Location: 2598229-2598448 bp Feature: domain Description: HEAT_2 Location: 2598976-2599219 bp Feature: domain Description: HEAT_2 Location: 2598976-259921 9 bp Feature: gene Location: 3615275-3616984 bp Feature: gene Location: 3616981-3619131 bp Ori: CAN92831.1 Feature: domain Description: SWIM Location: 3618601-3618694 bp Feature: domain Description: SWIM Location: 361 8601 -361 8694 bp Feature: gene Location: 3619572-3621197 bp Ori: CAN92832.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3620352-3620961 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3620352-3620961 bp Feature: gene Location: 3621482-3623116 bp Ori: CAN92833.1 Feature: domain Description: SBBP Location: 3621833-3621902 bp Feature: domain Description: SBBP Location: 3621 833-3621 902 bp Feature: domain Description: SBBP Location: 3622016-3622082 bp Feature: domain Description: SBBP Location: 362201 6-3622082 bp Feature: gene Location: 3623312-3623683 bp Feature: gene Location: 7800245-7801426 bp Ori: CAN95700.1 Feature: domain Description: Y2_Tnp Location: 7800632-7801139 bp Feature: domain Description: Y2_Tnp Location: 7800632-7801 1 39 bp Feature: gene Location: 7802101-7803378 bp Feature: gene Location: 7803876-7805195 bp Ori: CAN95702.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7804158-7804836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78041 58-7804836 bp Feature: gene Location: 7805906-7807093 bp Feature: gene Location: 7807492-7809174 bp Ori: CAN95704.1 Feature: domain Description: DUF3556 Location: 7807540-7809166 bp Feature: domain Description: DUF3556 Location: 7807540-78091 66 bp Feature: gene Location: 8807083-8809065 bp Ori: CAN96484.1 Feature: domain Description: STKc_PknB_like Location: 8807173-8808013 bp Feature: domain Description: STKc_PknB_like Location: 88071 73-880801 3 bp Feature: domain Description: pfam13191 Location: 8808109-8808595 bp Feature: domain Description: pfam1 31 91 Location: 88081 09-8808595 bp Feature: gene Location: 8809621-8810673 bp Ori: CAN96485.1 Gene: dapE3 Feature: domain Description: PRK13007 Location: 8809633-8810659 bp Feature: domain Description: PRK1 3007 Location: 8809633-881 0659 bp Feature: gene Location: 8810865-8812184 bp Ori: CAN96486.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8811147-8811825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881 1 1 47-881 1 825 bp Feature: gene Location: 8812866-8813654 bp Ori: CAN96487.1 Feature: domain Description: R2K_2 Location: 8813115-8813577 bp Feature: domain Description: R2K_2 Location: 881 31 1 5-881 3577 bp Feature: gene Location: 8813730-8814782 bp Ori: CAN96488.1 Feature: domain Description: PAS Location: 8813799-8814228 bp Feature: domain Description: PAS Location: 881 3799-881 4228 bp Feature: domain Description: STAS_RsbR_RsbS_like Location: 8814345-8814669 bp Feature: domain Description: STAS_RsbR_RsbS_like Location: 881 4345-881 4669 bp Feature: gene Location: 8901802-8905593 bp Ori: CAN96551.1 Gene: hrpA Feature: domain Description: DEAH_box_HrpA Location: 8901913-8905579 bp Feature: domain Description: DEAH_box_HrpA Location: 8901 91 3-8905579 bp Feature: gene Location: 8906461-8910042 bp Ori: CAN96552.1 Feature: domain Description: M4_TLP Location: 8907439-8908330 bp Feature: domain Description: M4_TLP Location: 8907439-8908330 bp Feature: domain Description: Stig1 Location: 8909557-8909674 bp Feature: domain Description: Stig1 Location: 8909557-8909674 bp Feature: domain Description: YfaP Location: 8909692-8909914 bp Feature: domain Description: YfaP Location: 8909692-890991 4 bp Feature: gene Location: 8910004-8910810 bp Ori: CAN96553.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8910607-8910775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 891 0607-891 0775 bp Feature: gene Location: 8910994-8912133 bp Ori: CAN96554.1 Feature: domain Description: PEPCTERM_chp_1 Location: 8911102-8912122 bp Feature: domain Description: PEPCTERM_chp_1 Location: 891 1 1 02-891 21 22 bp Feature: gene Location: 8912580-8913161 bp Ori: CAN96555.1 Feature: domain Description: Metallophos_2 Location: 8912637-8913087 bp Feature: domain Description: Metallophos_2 Location: 891 2637-891 3087 bp Feature: gene Location: 9203697-9204719 bp Ori: CAN96782.1 Feature: domain Description: HTH_28 Location: 9203706-9203799 bp Feature: domain Description: HTH_28 Location: 9203706-9203799 bp Feature: domain Description: Tra5 Location: 9203859-9204576 bp Feature: domain Description: Tra5 Location: 9203859-9204576 bp Feature: gene Location: 9204716-9205177 bp Ori: CAN96783.1 Feature: domain Description: HTH_Tnp_1 Location: 9204734-9204791 bp Feature: domain Description: HTH_Tnp_1 Location: 9204734-9204791 bp Feature: domain Description: HTH_Tnp_1 Location: 9204845-9205079 bp Feature: domain Description: HTH_Tnp_1 Location: 9204845-9205079 bp Feature: gene Location: 9205479-9206786 bp Ori: CAN96784.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9205764-9206382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9205764-9206382 bp Feature: domain Description: GIIM Note: maturase Location: 9206457-9206676 bp Feature: domain Description: GIIM Note: maturase Location: 9206457-9206676 bp Feature: gene Location: 9207181-9208650 bp Ori: CAN96785.1 Feature: domain Description: LZ_Tnp_IS66 Location: 9207307-9207550 bp Feature: domain Description: LZ_Tnp_IS66 Location: 9207307-9207550 bp Feature: domain Description: zf-IS66 Location: 9207592-9207682 bp Feature: domain Description: zf-IS66 Location: 9207592-9207682 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9207748-9208570 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9207748-9208570 bp Feature: gene Location: 9209648-9211312 bp Ori: CAN96786.1 Feature: domain Description: LZ_Tnp_IS66 Location: 9209804-9210056 bp Feature: domain Description: LZ_Tnp_IS66 Location: 9209804-921 0056 bp Feature: domain Description: zf-IS66 Location: 9210083-9210212 bp Feature: domain Description: zf-IS66 Location: 921 0083-921 021 2 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9210263-9211121 bp Feature: domain Description: DDE_Tnp_IS66 Location: 921 0263-921 1 1 21 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9211142-9211253 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 921 1 1 42-921 1 253 bp Feature: gene Location: 9230543-9231550 bp Ori: CAN96804.1 Feature: domain Description: RpoE Location: 9230588-9231074 bp Feature: domain Description: RpoE Location: 9230588-9231 074 bp Feature: gene Location: 9231547-9232134 bp Ori: CAN96805.1 Feature: domain Description: RibD_C Location: 9231580-9232102 bp Feature: domain Description: RibD_C Location: 9231 580-92321 02 bp Feature: gene Location: 9232476-9233168 bp Ori: CAN96806.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9232605-9232809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9232605-9232809 bp Feature: gene Location: 9234371-9235180 bp Ori: CAN96807.1 Feature: domain Description: DUF1287 Location: 9234572-9235064 bp Feature: domain Description: DUF1 287 Location: 9234572-9235064 bp Feature: gene Location: 9235365-9236099 bp Ori: CAN96808.1 Feature: domain Description: Haem_oxygenas_2 Location: 9235476-9236046 bp Feature: domain Description: Haem_oxygenas_2 Location: 9235476-9236046 bp Feature: gene Location: 12911814-12914015 bp Feature: gene Location: 12914012-12915064 bp Feature: gene Location: 12915914-12917068 bp Ori: CAN99454.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12916010-12916697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 291 601 0-1 291 6697 bp Feature: gene Location: 12917784-12919511 bp Ori: CAN99455.1 Feature: domain Description: Trypsin_2 Location: 12917838-12918264 bp Feature: domain Description: Trypsin_2 Location: 1 291 7838-1 291 8264 bp Feature: gene Location: 12919483-12919749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, TMR_SDR_a (cd05269), RVT-Retrons, SWIM (pfam04434), KOG0296 (KOG0296, Angio-associated migratory cell protein (contains WD40 repeats) ), WD40 (smart00320), HEAT_2 (pfam13646), HEAT (sd00044), SBBP (pfam06739), Y2_Tnp (pfam04986)
DUF3556 (pfam12077), STKc_PknB_like (cd14014), pfam13191 (AAA_16;AAA ATPase domain), PRK13007 (succinyl-diaminopimelate desuccinylase; Reviewed), R2K_2 (pfam18299), PAS (smart00091), STAS_RsbR_RsbS_like (cd07041), DEAH_box_HrpA (TIGR01967), M4_TLP (cd09597), Stig1 (pfam04885)
YfaP (COG4676), PEPCTERM_chp_1 (TIGR03118), Metallophos_2 (pfam12850), HTH_28 (pfam13518), Tra5 (COG2801), HTH_Tnp_1 (pfam01527), GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)
DDE_Tnp_IS66_C (pfam13817), RpoE (COG3343), RibD_C (pfam01872), DUF1287 (pfam06940), Haem_oxygenas_2 (pfam14518), Trypsin_2 (pfam13365)