myRT

myRT report for GCA_000092525.1_ASM9252v1

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Seq: CP000039.1 Shigella sonnei Ss046 plasmid pSS_046, complete sequence (214396 bp)
Overview 1 RT 1: 27828-33512 bp 2 RT 2: 121226-123634 bp 3 RT 3: 131553-136857 bp Neighborhood of RT #1 [27828, 33562] sopB_N ParB COG3547 RVT-GII GIIM RVT-GII COG4584 PRK09183 Neighborhood of RT #2 [121226, 123831] Y2_Tnp RVT-GII RVT-GII PHA02517 PHA02517 Neighborhood of RT #3 [131553, 136859] ushA RVT-GII GIIM GIIM RVT-GII Tra5 PRK09409 Feature: gene Location: 27828-28808 bp Ori: AAZ91052.1 Gene: parB Feature: domain Description: sopB_N Location: 28005-28200 bp Feature: domain Description: sopB_N Location: 28005-28200 bp Feature: domain Description: ParB Location: 28413-28788 bp Feature: domain Description: ParB Location: 2841 3-28788 bp Feature: gene Location: 29064-29549 bp Ori: AAZ91053.1 Feature: domain Description: COG3547 Location: 29082-29514 bp Feature: domain Description: COG3547 Location: 29082-2951 4 bp Feature: gene Location: 29838-30437 bp Ori: AAZ91054.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29856-30060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29856-30060 bp Feature: domain Description: GIIM Note: maturase Location: 30138-30360 bp Feature: domain Description: GIIM Note: maturase Location: 301 38-30360 bp Feature: gene Location: 30380-30964 bp Ori: AAZ91055.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30476-30938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30476-30938 bp Feature: gene Location: 31617-32765 bp Ori: AAZ91056.1 Feature: domain Description: COG4584 Location: 31623-32433 bp Feature: domain Description: COG4584 Location: 31 623-32433 bp Feature: gene Location: 32765-33562 bp Ori: AAZ91057.1 Feature: domain Description: PRK09183 Location: 32777-33512 bp Feature: domain Description: PRK091 83 Location: 32777-3351 2 bp Feature: gene Location: 121226-121582 bp Ori: AAZ91155.1 Feature: domain Description: Y2_Tnp Location: 121277-121454 bp Feature: domain Description: Y2_Tnp Location: 1 21 277-1 21 454 bp Feature: gene Location: 121582-122004 bp Feature: gene Location: 122667-122906 bp Ori: AAZ91157.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122673-122880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 22673-1 22880 bp Feature: gene Location: 122938-123138 bp Ori: AAZ91158.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122953-123127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 22953-1 231 27 bp Feature: gene Location: 123053-123295 bp Ori: AAZ91159.1 Feature: domain Description: PHA02517 Location: 123089-123251 bp Feature: domain Description: PHA0251 7 Location: 1 23089-1 23251 bp Feature: gene Location: 123268-123831 bp Ori: AAZ91160.1 Feature: domain Description: PHA02517 Location: 123328-123634 bp Feature: domain Description: PHA0251 7 Location: 1 23328-1 23634 bp Feature: gene Location: 131553-133205 bp Ori: AAZ91167.1 Gene: ushA Feature: domain Description: ushA Location: 131565-133203 bp Feature: domain Description: ushA Location: 1 31 565-1 33203 bp Feature: gene Location: 133174-133359 bp Feature: gene Location: 133712-134239 bp Ori: AAZ91169.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133718-133862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3371 8-1 33862 bp Feature: domain Description: GIIM Note: maturase Location: 133946-134162 bp Feature: domain Description: GIIM Note: maturase Location: 1 33946-1 341 62 bp Feature: gene Location: 134323-134568 bp Ori: AAZ91170.1 Feature: domain Description: GIIM Note: maturase Location: 134329-134470 bp Feature: domain Description: GIIM Note: maturase Location: 1 34329-1 34470 bp Feature: gene Location: 134538-135665 bp Ori: AAZ91171.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134838-135495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 34838-1 35495 bp Feature: gene Location: 135678-135878 bp Ori: AAZ91172.1 Feature: domain Description: Tra5 Location: 135687-135861 bp Feature: domain Description: Tra5 Location: 1 35687-1 35861 bp Feature: gene Location: 136020-136859 bp Ori: AAZ91173.1 Feature: domain Description: PRK09409 Location: 136023-136857 bp Feature: domain Description: PRK09409 Location: 1 36023-1 36857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), Y2_Tnp (pfam04986), PHA02517 (putative transposase OrfB; Reviewed), ushA (PRK09558)
Tra5 (COG2801), PRK09409 (IS2 transposase TnpB; Reviewed)