myRT

myRT report for GCA_000147335.1_ASM14733v1

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Seq: CP002198.1 Cyanothece sp. PCC 7822, complete genome (6091620 bp)
Overview 1 RT 1: 22336-28120 bp 2 RT 2: 2738489-2745986 bp 3 RT 3: 3114618-3121381 bp 4 RT 4: 3526609-3533326 bp 5 RT 5: 4807769-4813916 bp Neighborhood of RT #1 [22336, 28797] RRM_HP0827_like NblA RVT_N RVT-GII GIIM Usp Usp STKc_PknB_like Neighborhood of RT #2 [2738489, 2746033] Bax1-I PRK07408 RVT_N RVT-GII GIIM HNH AcrR GDH Neighborhood of RT #3 [3114618, 3121608] RloB AAA_21 RVT_N RVT-GII YkfC HNH PS_pyruv_trans Neighborhood of RT #4 [3526609, 3533337] DUF820 T_den_put_tspse gidA RVT_N RVT-GII GIIM McrA InsQ Y1_Tnp Neighborhood of RT #5 [4807769, 4813933] ribokinase_group_B RVT_N RVT-GII GIIM McrA rluA_subfam COG4678 Feature: gene Location: 22336-22839 bp Ori: ADN12073.1 Feature: domain Description: RRM_HP0827_like Location: 22348-22579 bp Feature: domain Description: RRM_HP0827_like Location: 22348-22579 bp Feature: gene Location: 23564-23665 bp Ori: ADN12074.1 Feature: domain Description: NblA Location: 23582-23660 bp Feature: domain Description: NblA Location: 23582-23660 bp Feature: gene Location: 24330-25919 bp Ori: ADN12075.1 Feature: domain Description: RVT_N Location: 24399-24645 bp Feature: domain Description: RVT_N Location: 24399-24645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24687-25350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24687-25350 bp Feature: domain Description: GIIM Note: maturase Location: 25437-25662 bp Feature: domain Description: GIIM Note: maturase Location: 25437-25662 bp Feature: gene Location: 26334-27212 bp Ori: ADN12076.1 Feature: domain Description: Usp Location: 26337-26736 bp Feature: domain Description: Usp Location: 26337-26736 bp Feature: domain Description: Usp Location: 26919-27192 bp Feature: domain Description: Usp Location: 2691 9-271 92 bp Feature: gene Location: 27259-28797 bp Ori: ADN12077.1 Feature: domain Description: STKc_PknB_like Location: 27301-28120 bp Feature: domain Description: STKc_PknB_like Location: 27301 -281 20 bp Feature: gene Location: 2738489-2739217 bp Ori: ADN14445.1 Feature: domain Description: Bax1-I Location: 2738558-2739194 bp Feature: domain Description: Bax1 -I Location: 2738558-27391 94 bp Feature: gene Location: 2739570-2740343 bp Ori: ADN14446.1 Feature: domain Description: PRK07408 Location: 2739579-2740338 bp Feature: domain Description: PRK07408 Location: 2739579-2740338 bp Feature: gene Location: 2741482-2743302 bp Ori: ADN14447.1 Feature: domain Description: RVT_N Location: 2741548-2741794 bp Feature: domain Description: RVT_N Location: 2741 548-2741 794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2741836-2742529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2741 836-2742529 bp Feature: domain Description: GIIM Note: maturase Location: 2742634-2742862 bp Feature: domain Description: GIIM Note: maturase Location: 2742634-2742862 bp Feature: domain Description: HNH Note: nucleases Location: 2743087-2743219 bp Feature: domain Description: HNH Note: nucleases Location: 2743087-274321 9 bp Feature: gene Location: 2744360-2744938 bp Ori: ADN14448.1 Feature: domain Description: AcrR Location: 2744378-2744930 bp Feature: domain Description: AcrR Location: 2744378-2744930 bp Feature: gene Location: 2745053-2746033 bp Ori: ADN14449.1 Feature: domain Description: GDH Location: 2745065-2745986 bp Feature: domain Description: GDH Location: 2745065-2745986 bp Feature: gene Location: 3114618-3115265 bp Ori: ADN14764.1 Feature: domain Description: RloB Location: 3114714-3115248 bp Feature: domain Description: RloB Location: 31 1 471 4-31 1 5248 bp Feature: gene Location: 3115266-3116570 bp Ori: ADN14765.1 Feature: domain Description: AAA_21 Location: 3115419-3116376 bp Feature: domain Description: AAA_21 Location: 31 1 541 9-31 1 6376 bp Feature: gene Location: 3117185-3119080 bp Ori: ADN14766.1 Feature: domain Description: RVT_N Location: 3117251-3117497 bp Feature: domain Description: RVT_N Location: 31 1 7251 -31 1 7497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3117602-3118277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 7602-31 1 8277 bp Feature: domain Description: YkfC Location: 3118535-3118724 bp Feature: domain Description: YkfC Location: 31 1 8535-31 1 8724 bp Feature: domain Description: HNH Note: nucleases Location: 3118835-3118970 bp Feature: domain Description: HNH Note: nucleases Location: 31 1 8835-31 1 8970 bp Feature: gene Location: 3119833-3120003 bp Feature: gene Location: 3120463-3121608 bp Ori: ADN14768.1 Feature: domain Description: PS_pyruv_trans Location: 3120520-3121381 bp Feature: domain Description: PS_pyruv_trans Location: 31 20520-31 21 381 bp Feature: gene Location: 3526609-3527379 bp Ori: ADN15125.1 Feature: domain Description: DUF820 Location: 3526717-3527113 bp Feature: domain Description: DUF820 Location: 352671 7-35271 1 3 bp Feature: domain Description: T_den_put_tspse Location: 3527203-3527371 bp Feature: domain Description: T_den_put_tspse Location: 3527203-3527371 bp Feature: gene Location: 3527399-3529303 bp Ori: ADN15126.1 Feature: domain Description: gidA Location: 3527438-3529280 bp Feature: domain Description: gidA Location: 3527438-3529280 bp Feature: gene Location: 3529680-3531524 bp Ori: ADN15127.1 Feature: domain Description: RVT_N Location: 3529740-3529986 bp Feature: domain Description: RVT_N Location: 3529740-3529986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3530028-3530721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3530028-3530721 bp Feature: domain Description: GIIM Note: maturase Location: 3530826-3531054 bp Feature: domain Description: GIIM Note: maturase Location: 3530826-3531 054 bp Feature: domain Description: McrA Location: 3531144-3531417 bp Feature: domain Description: McrA Location: 3531 1 44-3531 41 7 bp Feature: gene Location: 3531651-3532880 bp Ori: ADN15128.1 Feature: domain Description: InsQ Location: 3531711-3532818 bp Feature: domain Description: InsQ Location: 3531 71 1 -353281 8 bp Feature: gene Location: 3532927-3533337 bp Ori: ADN15129.1 Feature: domain Description: Y1_Tnp Location: 3532981-3533326 bp Feature: domain Description: Y1 _Tnp Location: 3532981 -3533326 bp Feature: gene Location: 4807769-4808653 bp Ori: ADN16277.1 Feature: domain Description: ribokinase_group_B Location: 4807778-4808609 bp Feature: domain Description: ribokinase_group_B Location: 4807778-4808609 bp Feature: gene Location: 4808805-4808984 bp Feature: gene Location: 4809560-4811254 bp Ori: ADN16279.1 Feature: domain Description: RVT_N Location: 4809593-4809839 bp Feature: domain Description: RVT_N Location: 4809593-4809839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4809881-4810544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4809881 -481 0544 bp Feature: domain Description: GIIM Note: maturase Location: 4810640-4810874 bp Feature: domain Description: GIIM Note: maturase Location: 481 0640-481 0874 bp Feature: domain Description: McrA Location: 4810952-4811222 bp Feature: domain Description: McrA Location: 481 0952-481 1 222 bp Feature: gene Location: 4812322-4813230 bp Ori: ADN16280.1 Feature: domain Description: rluA_subfam Location: 4812367-4813216 bp Feature: domain Description: rluA_subfam Location: 481 2367-481 321 6 bp Feature: gene Location: 4813250-4813933 bp Ori: ADN16281.1 Feature: domain Description: COG4678 Location: 4813340-4813916 bp Feature: domain Description: COG4678 Location: 481 3340-481 391 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RRM_HP0827_like (cd12399), NblA (pfam04485), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Usp (pfam00582), STKc_PknB_like (cd14014), Bax1-I (pfam01027), PRK07408 (RNA polymerase sigma factor SigF; Reviewed), HNH (pfam01844)
AcrR (COG1309), GDH (cd05301), RloB (pfam13707), AAA_21 (pfam13304), YkfC (COG3344), PS_pyruv_trans (pfam04230), DUF820, T_den_put_tspse (TIGR01784), gidA (TIGR00136), McrA (COG4058)
InsQ (COG0675), Y1_Tnp (pfam01797), ribokinase_group_B (cd01945), rluA_subfam (TIGR00005), COG4678 (Muramidase (phage lambda lysozyme) )

Seq: CP002200.1 Cyanothece sp. PCC 7822 plasmid Cy782202, complete sequence (473846 bp)
Overview 1 RT 1: 129339-133055 bp 2 RT 2: 233415-239981 bp 3 RT 3: 271365-274860 bp Neighborhood of RT #1 [129339, 133055] PRK07459 RVT-CRISPR-like COG5550 Neighborhood of RT #2 [233415, 239981] NB-ARC TPR_12 TPR_12 TPR_12 TPR_12 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Neighborhood of RT #3 [271365, 274871] RVT_N RVT-GII GIIM McrA Feature: gene Location: 129339-129716 bp Ori: ADN18102.1 Feature: domain Description: PRK07459 Location: 129351-129678 bp Feature: domain Description: PRK07459 Location: 12 9351-12 9678 bp Feature: gene Location: 129787-130278 bp Feature: gene Location: 131471-132310 bp Ori: ADN18104.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 131678-132251 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 131678-132 2 51 bp Feature: gene Location: 132376-132741 bp Ori: ADN18105.1 Feature: domain Description: COG5550 Location: 132379-132733 bp Feature: domain Description: COG5550 Location: 132 379-132 733 bp Feature: gene Location: 132738-133055 bp Feature: gene Location: 233415-234902 bp Ori: ADN18193.1 Feature: domain Description: NB-ARC Location: 233742-234471 bp Feature: domain Description: NB-ARC Location: 2 33742 -2 34471 bp Feature: gene Location: 234991-236499 bp Ori: ADN18194.1 Feature: domain Description: TPR_12 Location: 235357-235564 bp Feature: domain Description: TPR_12 Location: 2 35357-2 35564 bp Feature: domain Description: TPR_12 Location: 235591-235804 bp Feature: domain Description: TPR_12 Location: 2 35591-2 35804 bp Feature: domain Description: TPR_12 Location: 235834-236038 bp Feature: domain Description: TPR_12 Location: 2 35834-2 36038 bp Feature: domain Description: TPR_12 Location: 236203-236401 bp Feature: domain Description: TPR_12 Location: 2 362 03-2 36401 bp Feature: gene Location: 237314-239329 bp Ori: ADN18195.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 237503-238112 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 37503-2 38112 bp Feature: domain Description: Cas1_I-II-III Location: 238334-239291 bp Feature: domain Description: Cas1_I-II-III Location: 2 38334-2 392 91 bp Feature: gene Location: 239355-239645 bp Ori: ADN18196.1 Feature: domain Description: Cas2_I_II_III Location: 239376-239607 bp Feature: domain Description: Cas2 _I_II_III Location: 2 39376-2 39607 bp Feature: gene Location: 239673-239981 bp Feature: gene Location: 271365-271781 bp Feature: gene Location: 271796-272614 bp Feature: gene Location: 273243-274871 bp Ori: ADN18227.1 Feature: domain Description: RVT_N Location: 273273-273519 bp Feature: domain Description: RVT_N Location: 2 732 73-2 73519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273561-274200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 73561-2 742 00 bp Feature: domain Description: GIIM Note: maturase Location: 274287-274521 bp Feature: domain Description: GIIM Note: maturase Location: 2 742 87-2 7452 1 bp Feature: domain Description: McrA Location: 274617-274860 bp Feature: domain Description: McrA Location: 2 74617-2 74860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07459 (single-stranded DNA-binding protein; Provisional), RVT-CRISPR, COG5550 (Predicted aspartyl protease ), NB-ARC (pfam00931), TPR_12 (pfam13424), Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)
McrA (COG4058)

Seq: CP002199.1 Cyanothece sp. PCC 7822 plasmid Cy782201, complete sequence (879545 bp)
Overview 1 RT 1: 843886-846515 bp Neighborhood of RT #1 [843886, 846553] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Feature: gene Location: 843886-844194 bp Feature: gene Location: 844222-844512 bp Ori: ADN17995.1 Feature: domain Description: Cas2_I_II_III Location: 844243-844474 bp Feature: domain Description: Cas2_I_II_III Location: 844243 -844474 bp Feature: gene Location: 844538-846553 bp Ori: ADN17996.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 844727-845336 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 844727-8453 3 6 bp Feature: domain Description: Cas1_I-II-III Location: 845558-846515 bp Feature: domain Description: Cas1_I-II-III Location: 845558-846515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656)