myRT

myRT report for GCA_000147715.3_ASM14771v3

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Seq: CP003532.1 Mesotoga prima MesG1.Ag.4.2, complete genome (2974229 bp)
Overview 1 RT 1: 890704-895556 bp 2 RT 2: 1702152-1706403 bp 3 RT 3: 1710275-1713282 bp 4 RT 4: 1760170-1763908 bp 5 RT 5: 1794992-1797759 bp 6 RT 6: 1804783-1809764 bp 7 RT 7: 1836565-1839617 bp 8 RT 8: 1846310-1850440 bp 9 RT 9: 1880728-1885320 bp 10 RT 10: 1912868-1915920 bp 11 RT 11: 1923033-1929120 bp 12 RT 12: 2517265-2521514 bp 13 RT 13: 2585717-2589892 bp 14 RT 14: 2623869-2628380 bp 15 RT 15: 2635763-2640908 bp 16 RT 16: 2770565-2774103 bp 17 RT 17: 2958516-2962235 bp Neighborhood of RT #1 [890704, 895567] RVT-GII RVT-GII GIIM CheY 5TM-5TMR_LYT PRK11360 BaeS Neighborhood of RT #2 [1702152, 1706423] RVT-GII GIIM COG5361 Neighborhood of RT #3 [1710275, 1713282] RVT-GII GIIM Neighborhood of RT #4 [1760170, 1763908] Cas6 RVT-GII GIIM Neighborhood of RT #5 [1794992, 1797759] RVT-GII GIIM Neighborhood of RT #6 [1804783, 1809764] RVT-GII GIIM RVT-GII GIIM Neighborhood of RT #7 [1836565, 1839617] RVT-GII GIIM Neighborhood of RT #8 [1846310, 1850440] IS285 RVT-GII GIIM Neighborhood of RT #9 [1880728, 1885367] FN3 RVT-GII GIIM COG3177 Neighborhood of RT #10 [1912868, 1915920] RVT-GII GIIM Neighborhood of RT #11 [1923033, 1929120] Transposase_mut IS285 RVT-GII GIIM RVT-GII GIIM Neighborhood of RT #12 [2517265, 2521567] RVT-GII GIIM MATE_MepA_like Neighborhood of RT #13 [2585717, 2589892] COG4447 COG4447 COG4447 COG4447 RVT-GII Neighborhood of RT #14 [2623869, 2628409] AppF RVT-GII GIIM GlpR Neighborhood of RT #15 [2635763, 2641138] DUF1343 MngR RVT-GII GIIM RVT-GII DEDD_Tnp_IS110 Transposase_20 Neighborhood of RT #16 [2770565, 2774103] sensory_box GAF RVT-GII GIIM Neighborhood of RT #17 [2958516, 2962235] RVT-GII GIIM Feature: gene Location: 890704-890835 bp Feature: gene Location: 891016-891195 bp Feature: gene Location: 891478-892008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 891673-892003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 891 673-892003 bp Feature: gene Location: 892082-892714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892085-892331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892085-892331 bp Feature: domain Description: GIIM Note: maturase Location: 892412-892628 bp Feature: domain Description: GIIM Note: maturase Location: 89241 2-892628 bp Feature: gene Location: 893049-893489 bp Feature: domain Description: CheY Location: 893061-893433 bp Feature: domain Description: CheY Location: 893061 -893433 bp Feature: gene Location: 893492-895567 bp Feature: domain Description: 5TM-5TMR_LYT Location: 893588-894041 bp Feature: domain Description: 5TM-5TMR_LYT Location: 893588-894041 bp Feature: domain Description: PRK11360 Location: 894056-894482 bp Feature: domain Description: PRK1 1 360 Location: 894056-894482 bp Feature: domain Description: BaeS Location: 894527-895556 bp Feature: domain Description: BaeS Location: 894527-895556 bp Feature: gene Location: 1702152-1702406 bp Feature: gene Location: 1702483-1702707 bp Feature: gene Location: 1702957-1704207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1703167-1703824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7031 67-1 703824 bp Feature: domain Description: GIIM Note: maturase Location: 1703905-1704121 bp Feature: domain Description: GIIM Note: maturase Location: 1 703905-1 7041 21 bp Feature: gene Location: 1704662-1704850 bp Feature: gene Location: 1705020-1706423 bp Feature: domain Description: COG5361 Location: 1705101-1706403 bp Feature: domain Description: COG5361 Location: 1 7051 01 -1 706403 bp Feature: gene Location: 1710275-1710541 bp Feature: gene Location: 1710649-1710807 bp Feature: gene Location: 1710880-1712115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1711075-1711732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 1 075-1 71 1 732 bp Feature: domain Description: GIIM Note: maturase Location: 1711813-1712029 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 1 81 3-1 71 2029 bp Feature: gene Location: 1712585-1712794 bp Feature: gene Location: 1713022-1713282 bp Feature: gene Location: 1760170-1760949 bp Feature: domain Description: Cas6 Location: 1760173-1760935 bp Feature: domain Description: Cas6 Location: 1 7601 73-1 760935 bp Feature: gene Location: 1761115-1761375 bp Feature: gene Location: 1761548-1762816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1761758-1762382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 761 758-1 762382 bp Feature: domain Description: GIIM Note: maturase Location: 1762421-1762652 bp Feature: domain Description: GIIM Note: maturase Location: 1 762421 -1 762652 bp Feature: gene Location: 1763245-1763373 bp Feature: gene Location: 1763507-1763908 bp Feature: gene Location: 1794992-1795222 bp Feature: gene Location: 1795304-1795573 bp Feature: gene Location: 1795626-1796861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1795821-1796478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 795821 -1 796478 bp Feature: domain Description: GIIM Note: maturase Location: 1796559-1796775 bp Feature: domain Description: GIIM Note: maturase Location: 1 796559-1 796775 bp Feature: gene Location: 1797331-1797498 bp Feature: gene Location: 1797562-1797759 bp Feature: gene Location: 1804783-1805010 bp Feature: gene Location: 1805040-1805192 bp Feature: gene Location: 1805662-1806897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1805857-1806514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 805857-1 80651 4 bp Feature: domain Description: GIIM Note: maturase Location: 1806595-1806811 bp Feature: domain Description: GIIM Note: maturase Location: 1 806595-1 80681 1 bp Feature: gene Location: 1807021-1807302 bp Feature: gene Location: 1807443-1808678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1807638-1808295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 807638-1 808295 bp Feature: domain Description: GIIM Note: maturase Location: 1808376-1808592 bp Feature: domain Description: GIIM Note: maturase Location: 1 808376-1 808592 bp Feature: gene Location: 1809148-1809471 bp Feature: gene Location: 1809549-1809764 bp Feature: gene Location: 1836565-1837053 bp Feature: gene Location: 1837099-1837272 bp Feature: gene Location: 1837448-1838683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1837643-1838300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 837643-1 838300 bp Feature: domain Description: GIIM Note: maturase Location: 1838381-1838597 bp Feature: domain Description: GIIM Note: maturase Location: 1 838381 -1 838597 bp Feature: gene Location: 1839233-1839403 bp Feature: gene Location: 1839414-1839617 bp Feature: gene Location: 1846310-1846474 bp Feature: gene Location: 1846730-1847944 bp Feature: domain Description: IS285 Location: 1846802-1847921 bp Feature: domain Description: IS285 Location: 1 846802-1 847921 bp Feature: gene Location: 1848080-1849348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1848290-1848914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 848290-1 84891 4 bp Feature: domain Description: GIIM Note: maturase Location: 1848953-1849184 bp Feature: domain Description: GIIM Note: maturase Location: 1 848953-1 8491 84 bp Feature: gene Location: 1849777-1849905 bp Feature: gene Location: 1850039-1850440 bp Feature: gene Location: 1880728-1881423 bp Feature: domain Description: FN3 Location: 1881151-1881376 bp Feature: domain Description: FN3 Location: 1 881 1 51 -1 881 376 bp Feature: gene Location: 1881523-1881753 bp Feature: gene Location: 1881974-1883242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1882184-1882808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8821 84-1 882808 bp Feature: domain Description: GIIM Note: maturase Location: 1882847-1883078 bp Feature: domain Description: GIIM Note: maturase Location: 1 882847-1 883078 bp Feature: gene Location: 1883671-1883799 bp Feature: gene Location: 1884180-1885367 bp Feature: domain Description: COG3177 Location: 1884303-1885320 bp Feature: domain Description: COG31 77 Location: 1 884303-1 885320 bp Feature: gene Location: 1912868-1913356 bp Feature: gene Location: 1913402-1913575 bp Feature: gene Location: 1913751-1914986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1913946-1914603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 3946-1 91 4603 bp Feature: domain Description: GIIM Note: maturase Location: 1914684-1914900 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 4684-1 91 4900 bp Feature: gene Location: 1915536-1915706 bp Feature: gene Location: 1915717-1915920 bp Feature: gene Location: 1923033-1923851 bp Feature: domain Description: Transposase_mut Location: 1923063-1923741 bp Feature: domain Description: Transposase_mut Location: 1 923063-1 923741 bp Feature: gene Location: 1923748-1924248 bp Feature: domain Description: IS285 Location: 1923754-1924225 bp Feature: domain Description: IS285 Location: 1 923754-1 924225 bp Feature: gene Location: 1924384-1925652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1924594-1925218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 924594-1 92521 8 bp Feature: domain Description: GIIM Note: maturase Location: 1925257-1925488 bp Feature: domain Description: GIIM Note: maturase Location: 1 925257-1 925488 bp Feature: gene Location: 1926081-1926209 bp Feature: gene Location: 1926284-1926484 bp Feature: gene Location: 1926601-1926735 bp Feature: gene Location: 1926877-1928112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1927072-1927729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 927072-1 927729 bp Feature: domain Description: GIIM Note: maturase Location: 1927810-1928026 bp Feature: domain Description: GIIM Note: maturase Location: 1 92781 0-1 928026 bp Feature: gene Location: 1928396-1928575 bp Feature: gene Location: 1928899-1929120 bp Feature: gene Location: 2517265-2517555 bp Feature: gene Location: 2517600-2517947 bp Feature: gene Location: 2518047-2519282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2518242-2518899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 8242-251 8899 bp Feature: domain Description: GIIM Note: maturase Location: 2518980-2519196 bp Feature: domain Description: GIIM Note: maturase Location: 251 8980-251 91 96 bp Feature: gene Location: 2519752-2519898 bp Feature: gene Location: 2520203-2521567 bp Feature: domain Description: MATE_MepA_like Location: 2520242-2521514 bp Feature: domain Description: MATE_MepA_like Location: 2520242-2521 51 4 bp Feature: gene Location: 2585717-2586769 bp Feature: domain Description: COG4447 Location: 2585807-2586029 bp Feature: domain Description: COG4447 Location: 2585807-2586029 bp Feature: domain Description: COG4447 Location: 2586083-2586242 bp Feature: domain Description: COG4447 Location: 2586083-2586242 bp Feature: domain Description: COG4447 Location: 2586254-2586431 bp Feature: domain Description: COG4447 Location: 2586254-2586431 bp Feature: domain Description: COG4447 Location: 2586494-2586710 bp Feature: domain Description: COG4447 Location: 2586494-258671 0 bp Feature: gene Location: 2587257-2587385 bp Feature: gene Location: 2587814-2588671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2588024-2588648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2588024-2588648 bp Feature: gene Location: 2588877-2589011 bp Feature: gene Location: 2589683-2589892 bp Feature: gene Location: 2623869-2624879 bp Feature: domain Description: AppF Location: 2623878-2624820 bp Feature: domain Description: AppF Location: 2623878-2624820 bp Feature: gene Location: 2625182-2625310 bp Feature: gene Location: 2625739-2627007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625949-2626573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625949-2626573 bp Feature: domain Description: GIIM Note: maturase Location: 2626612-2626843 bp Feature: domain Description: GIIM Note: maturase Location: 262661 2-2626843 bp Feature: gene Location: 2627193-2627480 bp Feature: gene Location: 2627669-2628409 bp Feature: domain Description: GlpR Location: 2627681-2628380 bp Feature: domain Description: GlpR Location: 2627681 -2628380 bp Feature: gene Location: 2635763-2636890 bp Feature: domain Description: DUF1343 Location: 2635835-2636864 bp Feature: domain Description: DUF1 343 Location: 2635835-2636864 bp Feature: gene Location: 2636902-2637630 bp Feature: domain Description: MngR Location: 2636914-2637616 bp Feature: domain Description: MngR Location: 263691 4-263761 6 bp Feature: gene Location: 2637993-2638625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2637996-2638242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2637996-2638242 bp Feature: domain Description: GIIM Note: maturase Location: 2638323-2638539 bp Feature: domain Description: GIIM Note: maturase Location: 2638323-2638539 bp Feature: gene Location: 2638699-2639229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2638894-2639224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2638894-2639224 bp Feature: gene Location: 2639580-2639906 bp Feature: gene Location: 2639912-2641138 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2639924-2640350 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 2639924-2640350 bp Feature: domain Description: Transposase_20 Location: 2640665-2640908 bp Feature: domain Description: Transposase_20 Location: 2640665-2640908 bp Feature: gene Location: 2770565-2771623 bp Feature: domain Description: sensory_box Location: 2770769-2771105 bp Feature: domain Description: sensory_box Location: 2770769-2771 1 05 bp Feature: domain Description: GAF Location: 2771177-2771606 bp Feature: domain Description: GAF Location: 2771 1 77-2771 606 bp Feature: gene Location: 2771700-2771924 bp Feature: gene Location: 2772105-2773340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2772300-2772957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2772300-2772957 bp Feature: domain Description: GIIM Note: maturase Location: 2773038-2773254 bp Feature: domain Description: GIIM Note: maturase Location: 2773038-2773254 bp Feature: gene Location: 2773327-2773560 bp Feature: gene Location: 2773885-2774103 bp Feature: gene Location: 2958516-2958749 bp Feature: gene Location: 2959088-2959345 bp Feature: gene Location: 2959835-2961070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2960030-2960687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2960030-2960687 bp Feature: domain Description: GIIM Note: maturase Location: 2960768-2960984 bp Feature: domain Description: GIIM Note: maturase Location: 2960768-2960984 bp Feature: gene Location: 2961421-2961738 bp Feature: gene Location: 2962086-2962235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CheY (COG0784), 5TM-5TMR_LYT (pfam07694), PRK11360 (two-component system sensor histidine kinase AtoS), BaeS (COG0642), COG5361 (Uncharacterized conserved protein ), Cas6 (pfam09559), IS285 (COG3328), FN3 (smart00060)
COG3177 (Fic family protein ), Transposase_mut (pfam00872), MATE_MepA_like (cd13143), COG4447 (Uncharacterized protein related to plant photosystem II stability/assembly factor ), AppF (COG4608), GlpR (COG1349), DUF1343 (pfam07075), MngR (COG2188), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)
sensory_box (TIGR00229), GAF (smart00065)