myRT

myRT report for GCA_000148425.1_ASM14842v1

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Seq: CP002210.1 Thermoanaerobacter sp. X513, complete genome (2456520 bp)
Overview 1 RT 1: 191815-197994 bp 2 RT 2: 205382-211280 bp 3 RT 3: 428849-437244 bp 4 RT 4: 539392-544332 bp 5 RT 5: 725407-730894 bp 6 RT 6: 915048-919707 bp 7 RT 7: 1546224-1552408 bp 8 RT 8: 1624902-1630234 bp 9 RT 9: 2046126-2053441 bp 10 RT 10: 2138097-2142999 bp Neighborhood of RT #1 [191815, 198002] FGGY_D-XK_EcXK-like xylF RVT-GII GIIM PRK13549 PRK13549 Neighborhood of RT #2 [205382, 211297] rbsC PRK10653 RVT-GII GIIM RpiR NagE Neighborhood of RT #3 [428849, 437258] HTH_32 rve Mu-transpos_C ExeA RVT-GII pyruv_ox_red HDGYP Neighborhood of RT #4 [539392, 544373] PRK12454 FmnP RVT-GII GIIM TsaE T6A_YeaZ Neighborhood of RT #5 [725407, 730908] Amj RNaseH_like RVT-GII GIIM PgsA Neighborhood of RT #6 [915048, 919718] ferrit_encaps RVT-GII GIIM CsoR-like_DUF156 NifS Neighborhood of RT #7 [1546224, 1552419] ExeA RVT-GII HTH_ARSR ArsP_1 Neighborhood of RT #8 [1624902, 1630257] DUF4314 RVT-GII GIIM ParB_N_like_MT YhdJ PRK12459 Neighborhood of RT #9 [2046126, 2053452] PRK07232 RVT-GII GIIM PRK12740 PRK11177 Neighborhood of RT #10 [2138097, 2142999] RVT-GII GIIM TPP_E1_PDC_ADC_BCADC Feature: gene Location: 191815-193317 bp Ori: ADN53853.1 Feature: domain Description: FGGY_D-XK_EcXK-like Location: 191821-193273 bp Feature: domain Description: FGGY_D-XK_EcXK-like Location: 1 91 821 -1 93273 bp Feature: gene Location: 193404-194510 bp Ori: ADN53854.1 Feature: domain Description: xylF Location: 193533-194472 bp Feature: domain Description: xylF Location: 1 93533-1 94472 bp Feature: gene Location: 194969-196381 bp Ori: ADN53855.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195317-195935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9531 7-1 95935 bp Feature: domain Description: GIIM Note: maturase Location: 195986-196211 bp Feature: domain Description: GIIM Note: maturase Location: 1 95986-1 9621 1 bp Feature: gene Location: 196480-197487 bp Ori: ADN53856.1 Feature: domain Description: PRK13549 Location: 196483-197467 bp Feature: domain Description: PRK1 3549 Location: 1 96483-1 97467 bp Feature: gene Location: 197502-198002 bp Ori: ADN53857.1 Feature: domain Description: PRK13549 Location: 197505-197994 bp Feature: domain Description: PRK1 3549 Location: 1 97505-1 97994 bp Feature: gene Location: 205382-206338 bp Ori: ADN53865.1 Feature: domain Description: rbsC Location: 205409-206330 bp Feature: domain Description: rbsC Location: 205409-206330 bp Feature: gene Location: 206421-207344 bp Ori: ADN53866.1 Feature: domain Description: PRK10653 Location: 206511-207342 bp Feature: domain Description: PRK1 0653 Location: 20651 1 -207342 bp Feature: gene Location: 207847-209259 bp Ori: ADN53867.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208195-208813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2081 95-20881 3 bp Feature: domain Description: GIIM Note: maturase Location: 208864-209089 bp Feature: domain Description: GIIM Note: maturase Location: 208864-209089 bp Feature: gene Location: 209959-210801 bp Ori: ADN53868.1 Feature: domain Description: RpiR Location: 209977-210790 bp Feature: domain Description: RpiR Location: 209977-21 0790 bp Feature: gene Location: 210815-211297 bp Ori: ADN53869.1 Feature: domain Description: NagE Location: 210839-211280 bp Feature: domain Description: NagE Location: 21 0839-21 1 280 bp Feature: gene Location: 428849-430174 bp Ori: ADN54081.1 Feature: domain Description: HTH_32 Location: 429014-429245 bp Feature: domain Description: HTH_32 Location: 42901 4-429245 bp Feature: domain Description: rve Location: 429320-429659 bp Feature: domain Description: rve Location: 429320-429659 bp Feature: domain Description: Mu-transpos_C Location: 429851-430016 bp Feature: domain Description: Mu-transpos_C Location: 429851 -43001 6 bp Feature: gene Location: 430192-430992 bp Ori: ADN54082.1 Feature: domain Description: ExeA Location: 430198-430963 bp Feature: domain Description: ExeA Location: 4301 98-430963 bp Feature: gene Location: 431162-432202 bp Ori: ADN54083.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431510-432128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 51 0-4321 28 bp Feature: gene Location: 432654-436181 bp Ori: ADN54084.1 Feature: domain Description: pyruv_ox_red Location: 432669-436170 bp Feature: domain Description: pyruv_ox_red Location: 432669-4361 70 bp Feature: gene Location: 436659-437258 bp Ori: ADN54085.1 Feature: domain Description: HDGYP Location: 436710-437244 bp Feature: domain Description: HDGYP Location: 43671 0-437244 bp Feature: gene Location: 539392-540333 bp Ori: ADN54182.1 Feature: domain Description: PRK12454 Location: 539395-540325 bp Feature: domain Description: PRK1 2454 Location: 539395-540325 bp Feature: gene Location: 540627-541211 bp Ori: ADN54183.1 Feature: domain Description: FmnP Location: 540642-541209 bp Feature: domain Description: FmnP Location: 540642-541 209 bp Feature: gene Location: 541674-543086 bp Ori: ADN54184.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542022-542640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542022-542640 bp Feature: domain Description: GIIM Note: maturase Location: 542691-542916 bp Feature: domain Description: GIIM Note: maturase Location: 542691 -54291 6 bp Feature: gene Location: 543223-543684 bp Ori: ADN54185.1 Feature: domain Description: TsaE Location: 543238-543673 bp Feature: domain Description: TsaE Location: 543238-543673 bp Feature: gene Location: 543681-544373 bp Ori: ADN54186.1 Feature: domain Description: T6A_YeaZ Location: 543690-544332 bp Feature: domain Description: T6A_YeaZ Location: 543690-544332 bp Feature: gene Location: 725407-726216 bp Ori: ADN54342.1 Feature: domain Description: Amj Location: 725446-726199 bp Feature: domain Description: Amj Location: 725446-7261 99 bp Feature: gene Location: 726326-726814 bp Ori: ADN54343.1 Feature: domain Description: RNaseH_like Location: 726371-726794 bp Feature: domain Description: RNaseH_like Location: 726371 -726794 bp Feature: gene Location: 727263-728675 bp Ori: ADN54344.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 727611-728229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72761 1 -728229 bp Feature: domain Description: GIIM Note: maturase Location: 728280-728505 bp Feature: domain Description: GIIM Note: maturase Location: 728280-728505 bp Feature: gene Location: 729833-730327 bp Feature: gene Location: 730393-730908 bp Ori: ADN54346.1 Feature: domain Description: PgsA Location: 730396-730894 bp Feature: domain Description: PgsA Location: 730396-730894 bp Feature: gene Location: 915048-915359 bp Ori: ADN54533.1 Feature: domain Description: ferrit_encaps Location: 915072-915351 bp Feature: domain Description: ferrit_encaps Location: 91 5072-91 5351 bp Feature: gene Location: 915519-916190 bp Feature: gene Location: 916639-918051 bp Ori: ADN54535.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916987-917605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 6987-91 7605 bp Feature: domain Description: GIIM Note: maturase Location: 917656-917881 bp Feature: domain Description: GIIM Note: maturase Location: 91 7656-91 7881 bp Feature: gene Location: 918218-918484 bp Ori: ADN54536.1 Feature: domain Description: CsoR-like_DUF156 Location: 918239-918470 bp Feature: domain Description: CsoR-like_DUF1 56 Location: 91 8239-91 8470 bp Feature: gene Location: 918567-919718 bp Ori: ADN54537.1 Feature: domain Description: NifS Location: 918570-919707 bp Feature: domain Description: NifS Location: 91 8570-91 9707 bp Feature: gene Location: 1546224-1547024 bp Ori: ADN55166.1 Feature: domain Description: ExeA Location: 1546230-1546995 bp Feature: domain Description: ExeA Location: 1 546230-1 546995 bp Feature: gene Location: 1548503-1549084 bp Feature: gene Location: 1549207-1550118 bp Ori: ADN55168.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1549555-1550107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 549555-1 5501 07 bp Feature: gene Location: 1550875-1551198 bp Ori: ADN55169.1 Feature: domain Description: HTH_ARSR Location: 1550914-1551106 bp Feature: domain Description: HTH_ARSR Location: 1 55091 4-1 551 1 06 bp Feature: gene Location: 1551250-1552419 bp Ori: ADN55170.1 Feature: domain Description: ArsP_1 Location: 1551355-1552408 bp Feature: domain Description: ArsP_1 Location: 1 551 355-1 552408 bp Feature: gene Location: 1624902-1625129 bp Ori: ADN55244.1 Feature: domain Description: DUF4314 Location: 1624920-1625121 bp Feature: domain Description: DUF431 4 Location: 1 624920-1 6251 21 bp Feature: gene Location: 1625129-1625818 bp Feature: gene Location: 1625970-1627253 bp Ori: ADN55246.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1626219-1626903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 62621 9-1 626903 bp Feature: domain Description: GIIM Note: maturase Location: 1626972-1627206 bp Feature: domain Description: GIIM Note: maturase Location: 1 626972-1 627206 bp Feature: gene Location: 1627845-1629083 bp Ori: ADN55247.1 Feature: domain Description: ParB_N_like_MT Location: 1627884-1628133 bp Feature: domain Description: ParB_N_like_MT Location: 1 627884-1 6281 33 bp Feature: domain Description: YhdJ Location: 1628313-1628991 bp Feature: domain Description: YhdJ Location: 1 62831 3-1 628991 bp Feature: gene Location: 1629064-1630257 bp Ori: ADN55248.1 Feature: domain Description: PRK12459 Location: 1629085-1630234 bp Feature: domain Description: PRK1 2459 Location: 1 629085-1 630234 bp Feature: gene Location: 2046126-2046317 bp Feature: gene Location: 2046343-2047554 bp Ori: ADN55650.1 Feature: domain Description: PRK07232 Location: 2046352-2047549 bp Feature: domain Description: PRK07232 Location: 2046352-2047549 bp Feature: gene Location: 2047713-2049125 bp Ori: ADN55651.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2048061-2048679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2048061 -2048679 bp Feature: domain Description: GIIM Note: maturase Location: 2048730-2048955 bp Feature: domain Description: GIIM Note: maturase Location: 2048730-2048955 bp Feature: gene Location: 2049573-2051612 bp Ori: ADN55652.1 Feature: domain Description: PRK12740 Location: 2049618-2051580 bp Feature: domain Description: PRK1 2740 Location: 204961 8-2051 580 bp Feature: gene Location: 2051731-2053452 bp Ori: ADN55653.1 Feature: domain Description: PRK11177 Location: 2051734-2053441 bp Feature: domain Description: PRK1 1 1 77 Location: 2051 734-2053441 bp Feature: gene Location: 2138097-2139509 bp Ori: ADN55727.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2138445-2139063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 38445-21 39063 bp Feature: domain Description: GIIM Note: maturase Location: 2139114-2139339 bp Feature: domain Description: GIIM Note: maturase Location: 21 391 1 4-21 39339 bp Feature: gene Location: 2140111-2140899 bp Ori: ADN55728.1 Feature: domain Description: TPP_E1_PDC_ADC_BCADC Location: 2140144-2140573 bp Feature: domain Description: TPP_E1 _PDC_ADC_BCADC Location: 21 401 44-21 40573 bp Feature: gene Location: 2142808-2142999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FGGY_D-XK_EcXK-like (cd07808), xylF (TIGR02634), RVT-GII, GIIM (pfam08388), PRK13549 (xylose transporter ATP-binding subunit; Provisional), rbsC (PRK09512), PRK10653 (ribose ABC transporter substrate-binding protein RbsB), RpiR (COG1737), NagE (COG2190), HTH_32 (pfam13565)
rve (pfam00665), Mu-transpos_C (pfam09299), ExeA (COG3267), pyruv_ox_red (TIGR02176), HDGYP (COG2206), PRK12454 (carbamate kinase-like carbamoyl phosphate synthetase; Reviewed), FmnP (COG3601), TsaE (pfam02367), T6A_YeaZ (TIGR03725), Amj (pfam10997)
RNaseH_like (pfam04308), PgsA (COG0558), ferrit_encaps (TIGR04535), CsoR-like_DUF156 (cl00846), NifS (COG1104), HTH_ARSR (smart00418), ArsP_1 (pfam03773), DUF4314 (pfam14192), ParB_N_like_MT (cd16844), YhdJ (COG0863)
PRK12459 (S-adenosylmethionine synthetase; Provisional), PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed), PRK12740 (elongation factor G-like protein EF-G2), PRK11177 (phosphoenolpyruvate-protein phosphotransferase PtsI), TPP_E1_PDC_ADC_BCADC (cd02000)