myRT

myRT report for GCA_000153485.2_ASM15348v2

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Seq: CP003879.1 Psychroflexus torquis ATCC 700755, complete genome (4321832 bp)
Overview 1 RT 1: 1-3669 bp 2 RT 2: 958930-965286 bp 3 RT 3: 1554414-1561410 bp 4 RT 4: 2059345-2064789 bp 5 RT 5: 2568911-2574250 bp 6 RT 6: 2931056-2939555 bp 7 RT 7: 3463535-3470057 bp 8 RT 8: 3737649-3742329 bp Neighborhood of RT #1 [1, 3725] RVT-GII GIIM INT_IntI_C Neighborhood of RT #2 [958930, 965327] COG2865 HTH_ARSR GIY-YIG_unchar_2 RVT-UG2 Crp Neighborhood of RT #3 [1554414, 1561505] InsA DDE_Tnp_IS1595 RVT-GII GIIM LRR_1 LRR_1 TIR_2 COG3415 DDE_3 Neighborhood of RT #4 [2059345, 2064789] KOG1980 RVT-GII GIIM HTH_XRE Neighborhood of RT #5 [2568911, 2574250] RVT-GII GIIM NERD DEXQc_UvrD DEXQc_UvrD Viral_helicase1 Neighborhood of RT #6 [2931056, 2939587] DDE_Tnp_1_assoc YhhI YhhI T5orf172 RVT-GII GIIM ATPase-cat_bd P-type_ATPase_HM Neighborhood of RT #7 [3463535, 3470057] OMP_b-brl RVT-GII GIIM RVT-GII GIIM Neighborhood of RT #8 [3737649, 3742329] AmpC RVT-GII GIIM Feature: gene Location: 1-1371 bp Ori: AFU67081.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-979 bp Feature: domain Description: GIIM Note: maturase Location: 1063-1279 bp Feature: domain Description: GIIM Note: maturase Location: 1 063-1 279 bp Feature: gene Location: 1952-2572 bp Feature: gene Location: 2949-3725 bp Ori: AFU67083.1 Feature: domain Description: INT_IntI_C Location: 3171-3669 bp Feature: domain Description: INT_IntI_C Location: 31 71 -3669 bp Feature: gene Location: 958930-960573 bp Ori: AFU67878.1 Feature: domain Description: COG2865 Location: 958993-960310 bp Feature: domain Description: COG2865 Location: 958993-96031 0 bp Feature: domain Description: HTH_ARSR Location: 960394-960562 bp Feature: domain Description: HTH_ARSR Location: 960394-960562 bp Feature: gene Location: 960588-961190 bp Ori: AFU67879.1 Feature: domain Description: GIY-YIG_unchar_2 Location: 960846-961020 bp Feature: domain Description: GIY-YIG_unchar_2 Location: 960846-961 020 bp Feature: gene Location: 961211-962794 bp Ori: AFU67880.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 961499-962426 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 961 499-962426 bp Feature: gene Location: 962783-963022 bp Feature: gene Location: 964629-965327 bp Ori: AFU67882.1 Feature: domain Description: Crp Location: 964704-965286 bp Feature: domain Description: Crp Location: 964704-965286 bp Feature: gene Location: 1554414-1554611 bp Feature: gene Location: 1554825-1555856 bp Ori: AFU68374.1 Feature: domain Description: InsA Location: 1554957-1555242 bp Feature: domain Description: InsA Location: 1 554957-1 555242 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 1555269-1555716 bp Feature: domain Description: DDE_Tnp_IS1 595 Location: 1 555269-1 55571 6 bp Feature: gene Location: 1556654-1557916 bp Ori: AFU68375.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1556867-1557527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 556867-1 557527 bp Feature: domain Description: GIIM Note: maturase Location: 1557611-1557818 bp Feature: domain Description: GIIM Note: maturase Location: 1 55761 1 -1 55781 8 bp Feature: gene Location: 1558688-1559821 bp Ori: AFU68376.1 Feature: domain Description: LRR_1 Location: 1558718-1559027 bp Feature: domain Description: LRR_1 Location: 1 55871 8-1 559027 bp Feature: domain Description: LRR_1 Location: 1559039-1559309 bp Feature: domain Description: LRR_1 Location: 1 559039-1 559309 bp Feature: domain Description: TIR_2 Location: 1559384-1559723 bp Feature: domain Description: TIR_2 Location: 1 559384-1 559723 bp Feature: gene Location: 1560471-1561505 bp Ori: AFU68377.1 Feature: domain Description: COG3415 Location: 1560528-1560948 bp Feature: domain Description: COG341 5 Location: 1 560528-1 560948 bp Feature: domain Description: DDE_3 Location: 1560987-1561410 bp Feature: domain Description: DDE_3 Location: 1 560987-1 561 41 0 bp Feature: gene Location: 2059345-2059623 bp Feature: gene Location: 2059625-2059969 bp Ori: AFU68742.1 Feature: domain Description: KOG1980 Location: 2059661-2059880 bp Feature: domain Description: KOG1 980 Location: 2059661 -2059880 bp Feature: gene Location: 2060602-2061972 bp Ori: AFU68743.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2060935-2061580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2060935-2061 580 bp Feature: domain Description: GIIM Note: maturase Location: 2061664-2061880 bp Feature: domain Description: GIIM Note: maturase Location: 2061 664-2061 880 bp Feature: gene Location: 2062573-2062857 bp Ori: AFU68744.1 Feature: domain Description: HTH_XRE Location: 2062681-2062840 bp Feature: domain Description: HTH_XRE Location: 2062681 -2062840 bp Feature: gene Location: 2064181-2064789 bp Feature: gene Location: 2568911-2570164 bp Ori: AFU69158.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2569124-2569781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25691 24-2569781 bp Feature: domain Description: GIIM Note: maturase Location: 2569871-2570069 bp Feature: domain Description: GIIM Note: maturase Location: 2569871 -2570069 bp Feature: gene Location: 2570240-2572234 bp Ori: AFU69159.1 Feature: domain Description: NERD Location: 2570300-2570564 bp Feature: domain Description: NERD Location: 2570300-2570564 bp Feature: domain Description: DEXQc_UvrD Location: 2570966-2571302 bp Feature: domain Description: DEXQc_UvrD Location: 2570966-2571 302 bp Feature: domain Description: DEXQc_UvrD Location: 2571341-2571482 bp Feature: domain Description: DEXQc_UvrD Location: 2571 341 -2571 482 bp Feature: domain Description: Viral_helicase1 Location: 2571890-2572127 bp Feature: domain Description: Viral_helicase1 Location: 2571 890-25721 27 bp Feature: gene Location: 2573897-2574250 bp Feature: gene Location: 2931056-2932195 bp Ori: AFU69474.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 2931110-2931365 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 2931 1 1 0-2931 365 bp Feature: domain Description: YhhI Location: 2931503-2931713 bp Feature: domain Description: YhhI Location: 2931 503-2931 71 3 bp Feature: domain Description: YhhI Location: 2931881-2932118 bp Feature: domain Description: YhhI Location: 2931 881 -29321 1 8 bp Feature: gene Location: 2932475-2933416 bp Ori: AFU69475.1 Feature: domain Description: T5orf172 Location: 2933129-2933372 bp Feature: domain Description: T5orf1 72 Location: 29331 29-2933372 bp Feature: gene Location: 2934171-2935433 bp Ori: AFU69476.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2934384-2935044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2934384-2935044 bp Feature: domain Description: GIIM Note: maturase Location: 2935128-2935335 bp Feature: domain Description: GIIM Note: maturase Location: 29351 28-2935335 bp Feature: gene Location: 2935572-2936207 bp Feature: gene Location: 2937155-2939587 bp Ori: AFU69478.1 Feature: domain Description: ATPase-cat_bd Location: 2937164-2937374 bp Feature: domain Description: ATPase-cat_bd Location: 29371 64-2937374 bp Feature: domain Description: P-type_ATPase_HM Location: 2937671-2939555 bp Feature: domain Description: P-type_ATPase_HM Location: 2937671 -2939555 bp Feature: gene Location: 3463535-3464104 bp Ori: AFU69928.1 Feature: domain Description: OMP_b-brl Location: 3463616-3464030 bp Feature: domain Description: OMP_b-brl Location: 346361 6-3464030 bp Feature: gene Location: 3464410-3464808 bp Feature: gene Location: 3465034-3466404 bp Ori: AFU69930.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3465367-3466012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3465367-346601 2 bp Feature: domain Description: GIIM Note: maturase Location: 3466096-3466312 bp Feature: domain Description: GIIM Note: maturase Location: 3466096-346631 2 bp Feature: gene Location: 3466972-3468234 bp Ori: AFU69931.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3467185-3467845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34671 85-3467845 bp Feature: domain Description: GIIM Note: maturase Location: 3467929-3468136 bp Feature: domain Description: GIIM Note: maturase Location: 3467929-34681 36 bp Feature: gene Location: 3469027-3469437 bp Feature: gene Location: 3469851-3470057 bp Feature: gene Location: 3737649-3737873 bp Feature: gene Location: 3738400-3739476 bp Ori: AFU70140.1 Feature: domain Description: AmpC Location: 3738637-3739390 bp Feature: domain Description: AmpC Location: 3738637-3739390 bp Feature: gene Location: 3739600-3740862 bp Ori: AFU70141.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3739813-3740473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373981 3-3740473 bp Feature: domain Description: GIIM Note: maturase Location: 3740557-3740764 bp Feature: domain Description: GIIM Note: maturase Location: 3740557-3740764 bp Feature: gene Location: 3741361-3741585 bp Feature: gene Location: 3741646-3742329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), INT_IntI_C (cd01193), COG2865 (Predicted transcriptional regulator, contains HTH domain ), HTH_ARSR (smart00418), GIY-YIG_unchar_2 (cd10447), RVT-UG2, Crp (pfam00325), InsA (COG3677), DDE_Tnp_IS1595 (pfam12762)
LRR_1 (sd00031), TIR_2 (pfam13676), COG3415 (Transposase ), DDE_3 (pfam13358), KOG1980 (KOG1980, Uncharacterized conserved protein ), HTH_XRE (smart00530), NERD (pfam08378), DEXQc_UvrD (cd17932), Viral_helicase1 (pfam01443), DDE_Tnp_1_assoc (pfam13808)
YhhI (COG5433), T5orf172 (smart00974), ATPase-cat_bd (pfam12156), P-type_ATPase_HM (cd07553), OMP_b-brl (pfam13505), AmpC (COG1680)