myRT

myRT report for GCA_000165465.1_ASM16546v1

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Seq: CP002175.1 Halanaerobium praevalens DSM 2228, complete genome (2309262 bp)
Overview 1 RT 1: 240057-247282 bp 2 RT 2: 553016-558503 bp 3 RT 3: 1161168-1167976 bp 4 RT 4: 1291121-1295931 bp 5 RT 5: 1569721-1575604 bp Neighborhood of RT #1 [240057, 247320] PLN02721 phoU_full RVT-GII GIIM AbgT UshA Neighborhood of RT #2 [553016, 558517] RVT-GII GIIM HAD_sEH-N_like MscK MscK Neighborhood of RT #3 [1161168, 1168023] PHA02517 RVT-UG19 RelE Neighborhood of RT #4 [1291121, 1296104] DEDD_Tnp_IS110 Transposase_20 HTH_Tnp_1 HTH_Tnp_1 RVT-GII GIIM Tra5 Neighborhood of RT #5 [1569721, 1575657] PBP2_taurine TauB RVT-GII GIIM RHOD RHOD SseA Feature: gene Location: 240057-241094 bp Feature: domain Description: PLN02721 Location: 240069-241080 bp Feature: domain Description: PLN02721 Location: 240069-241 080 bp Feature: gene Location: 241206-241859 bp Feature: domain Description: phoU_full Location: 241221-241851 bp Feature: domain Description: phoU_full Location: 241 221 -241 851 bp Feature: gene Location: 242674-243843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 242902-243523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 242902-243523 bp Feature: domain Description: GIIM Note: maturase Location: 243568-243760 bp Feature: domain Description: GIIM Note: maturase Location: 243568-243760 bp Feature: gene Location: 244006-245529 bp Feature: domain Description: AbgT Location: 244033-245527 bp Feature: domain Description: AbgT Location: 244033-245527 bp Feature: gene Location: 245797-247320 bp Feature: domain Description: UshA Location: 245878-247282 bp Feature: domain Description: UshA Location: 245878-247282 bp Feature: gene Location: 553016-553753 bp Feature: gene Location: 553760-554338 bp Feature: gene Location: 555196-556302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555361-555982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555361 -555982 bp Feature: domain Description: GIIM Note: maturase Location: 556027-556219 bp Feature: domain Description: GIIM Note: maturase Location: 556027-55621 9 bp Feature: gene Location: 556559-557155 bp Feature: domain Description: HAD_sEH-N_like Location: 556565-557141 bp Feature: domain Description: HAD_sEH-N_like Location: 556565-5571 41 bp Feature: gene Location: 557201-558517 bp Feature: domain Description: MscK Location: 557225-557576 bp Feature: domain Description: MscK Location: 557225-557576 bp Feature: domain Description: MscK Location: 557585-558503 bp Feature: domain Description: MscK Location: 557585-558503 bp Feature: gene Location: 1161168-1162001 bp Feature: domain Description: PHA02517 Location: 1161192-1161975 bp Feature: domain Description: PHA0251 7 Location: 1 1 61 1 92-1 1 61 975 bp Feature: gene Location: 1162365-1163849 bp Feature: gene Location: 1164008-1166119 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 1164377-1164875 bp Feature: RT Description: RVT-UG1 9 Note: UG1 9 RT Location: 1 1 64377-1 1 64875 bp Feature: gene Location: 1166295-1167002 bp Feature: gene Location: 1167721-1168023 bp Feature: domain Description: RelE Location: 1167727-1167976 bp Feature: domain Description: RelE Location: 1 1 67727-1 1 67976 bp Feature: gene Location: 1291121-1292341 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 1291148-1291610 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 291 1 48-1 291 61 0 bp Feature: domain Description: Transposase_20 Location: 1291937-1292192 bp Feature: domain Description: Transposase_20 Location: 1 291 937-1 2921 92 bp Feature: gene Location: 1292686-1293177 bp Feature: domain Description: HTH_Tnp_1 Location: 1292695-1292833 bp Feature: domain Description: HTH_Tnp_1 Location: 1 292695-1 292833 bp Feature: domain Description: HTH_Tnp_1 Location: 1292857-1293088 bp Feature: domain Description: HTH_Tnp_1 Location: 1 292857-1 293088 bp Feature: gene Location: 1293698-1294945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1293902-1294559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 293902-1 294559 bp Feature: domain Description: GIIM Note: maturase Location: 1294640-1294859 bp Feature: domain Description: GIIM Note: maturase Location: 1 294640-1 294859 bp Feature: gene Location: 1295155-1295358 bp Feature: gene Location: 1295529-1296104 bp Feature: domain Description: Tra5 Location: 1295535-1295931 bp Feature: domain Description: Tra5 Location: 1 295535-1 295931 bp Feature: gene Location: 1569721-1570788 bp Feature: domain Description: PBP2_taurine Location: 1569847-1570504 bp Feature: domain Description: PBP2_taurine Location: 1 569847-1 570504 bp Feature: gene Location: 1570825-1571619 bp Feature: domain Description: TauB Location: 1570852-1571608 bp Feature: domain Description: TauB Location: 1 570852-1 571 608 bp Feature: gene Location: 1571773-1572879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1571938-1572559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 571 938-1 572559 bp Feature: domain Description: GIIM Note: maturase Location: 1572604-1572796 bp Feature: domain Description: GIIM Note: maturase Location: 1 572604-1 572796 bp Feature: gene Location: 1573753-1574652 bp Feature: domain Description: RHOD Location: 1573918-1574158 bp Feature: domain Description: RHOD Location: 1 57391 8-1 5741 58 bp Feature: domain Description: RHOD Location: 1574356-1574593 bp Feature: domain Description: RHOD Location: 1 574356-1 574593 bp Feature: gene Location: 1574737-1575657 bp Feature: domain Description: SseA Location: 1574842-1575604 bp Feature: domain Description: SseA Location: 1 574842-1 575604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN02721 (threonine aldolase), phoU_full (TIGR02135), RVT-GII, GIIM (pfam08388), AbgT (COG2978), UshA (COG0737), HAD_sEH-N_like (cd02603), MscK (COG3264), PHA02517 (putative transposase OrfB; Reviewed), RVT-UG19
RelE (pfam06296), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), HTH_Tnp_1 (pfam01527), Tra5 (COG2801), PBP2_taurine (cd13560), TauB (COG4525), RHOD (smart00450), SseA (COG2897)