myRT

myRT report for GCA_000165485.1_ASM16548v1

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Seq: CP002271.1 Stigmatella aurantiaca DW4/3-1, complete genome (10260756 bp)
Overview 1 RT 1: 194204-207316 bp 2 RT 2: 1795126-1799712 bp 3 RT 3: 3083656-3089423 bp 4 RT 4: 3186808-3193221 bp 5 RT 5: 3734273-3739774 bp 6 RT 6: 4701796-4708817 bp 7 RT 7: 9438147-9442711 bp Neighborhood of RT #1 [194204, 207381] ClC_sycA_like ELWxxDGT_rpt ELWxxDGT_rpt ELWxxDGT_rpt ELWxxDGT_rpt ELWxxDGT_rpt ELWxxDGT_rpt ELWxxDGT_rpt ELWxxDGT_rpt RVT-Retrons WGR_MMR_like WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Neighborhood of RT #2 [1795126, 1799990] UDG_F3_SMUG RVT-GII Lactonase DUF2652 Neighborhood of RT #3 [3083656, 3089440] DUF262 RVT-GII GIIM Phage_T4_gp19 Neighborhood of RT #4 [3186808, 3193247] RVT-GII GIIM Phage_T4_gp19 18 COG3497 Neighborhood of RT #5 [3734273, 3739899] COG3293 COG3293 RVT-GII TnpB_IS66 HTH_Tnp_1 Neighborhood of RT #6 [4701796, 4709776] RVT-GII DUF772 DDE_Tnp_1_6 SF2_C_Ski2 Neighborhood of RT #7 [9438147, 9442711] RVT-GII Methyltransf_25 Feature: gene Location: 194204-195493 bp Ori: ADO67962.1 Feature: domain Description: ClC_sycA_like Location: 194255-195380 bp Feature: domain Description: ClC_sycA_like Location: 1 94255-1 95380 bp Feature: gene Location: 195648-197138 bp Ori: ADO67963.1 Feature: domain Description: ELWxxDGT_rpt Location: 195801-195855 bp Feature: domain Description: ELWxxDGT_rpt Location: 1 95801 -1 95855 bp Feature: domain Description: ELWxxDGT_rpt Location: 195864-196008 bp Feature: domain Description: ELWxxDGT_rpt Location: 1 95864-1 96008 bp Feature: domain Description: ELWxxDGT_rpt Location: 196020-196155 bp Feature: domain Description: ELWxxDGT_rpt Location: 1 96020-1 961 55 bp Feature: domain Description: ELWxxDGT_rpt Location: 196170-196284 bp Feature: domain Description: ELWxxDGT_rpt Location: 1 961 70-1 96284 bp Feature: domain Description: ELWxxDGT_rpt Location: 196641-196737 bp Feature: domain Description: ELWxxDGT_rpt Location: 1 96641 -1 96737 bp Feature: domain Description: ELWxxDGT_rpt Location: 196752-196887 bp Feature: domain Description: ELWxxDGT_rpt Location: 1 96752-1 96887 bp Feature: domain Description: ELWxxDGT_rpt Location: 196896-197031 bp Feature: domain Description: ELWxxDGT_rpt Location: 1 96896-1 97031 bp Feature: domain Description: ELWxxDGT_rpt Location: 197046-197088 bp Feature: domain Description: ELWxxDGT_rpt Location: 1 97046-1 97088 bp Feature: gene Location: 197142-198584 bp Ori: ADO67964.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 197694-198342 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 97694-1 98342 bp Feature: gene Location: 198989-200827 bp Ori: ADO67965.1 Feature: domain Description: WGR_MMR_like Location: 200618-200801 bp Feature: domain Description: WGR_MMR_like Location: 20061 8-200801 bp Feature: gene Location: 200824-207381 bp Ori: ADO67966.1 Feature: domain Description: WD40 Location: 200983-201673 bp Feature: domain Description: WD40 Location: 200983-201 673 bp Feature: domain Description: HEAT_2 Location: 201847-202063 bp Feature: domain Description: HEAT_2 Location: 201 847-202063 bp Feature: domain Description: HEAT_2 Location: 202663-202912 bp Feature: domain Description: HEAT_2 Location: 202663-20291 2 bp Feature: domain Description: HEAT_2 Location: 203056-203302 bp Feature: domain Description: HEAT_2 Location: 203056-203302 bp Feature: domain Description: HEAT_2 Location: 203830-204001 bp Feature: domain Description: HEAT_2 Location: 203830-204001 bp Feature: domain Description: HEAT_2 Location: 204028-204232 bp Feature: domain Description: HEAT_2 Location: 204028-204232 bp Feature: domain Description: HEAT_2 Location: 204619-204808 bp Feature: domain Description: HEAT_2 Location: 20461 9-204808 bp Feature: domain Description: HEAT_2 Location: 204853-205060 bp Feature: domain Description: HEAT_2 Location: 204853-205060 bp Feature: domain Description: HEAT_2 Location: 205207-205459 bp Feature: domain Description: HEAT_2 Location: 205207-205459 bp Feature: domain Description: HEAT_2 Location: 206083-206317 bp Feature: domain Description: HEAT_2 Location: 206083-20631 7 bp Feature: domain Description: HEAT_2 Location: 206827-207022 bp Feature: domain Description: HEAT_2 Location: 206827-207022 bp Feature: domain Description: HEAT_2 Location: 207166-207316 bp Feature: domain Description: HEAT_2 Location: 2071 66-20731 6 bp Feature: gene Location: 1795126-1795515 bp Ori: ADO69279.1 Feature: domain Description: UDG_F3_SMUG Location: 1795138-1795453 bp Feature: domain Description: UDG_F3_SMUG Location: 1 7951 38-1 795453 bp Feature: gene Location: 1795515-1795877 bp Feature: gene Location: 1796092-1797930 bp Ori: ADO69281.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1796848-1797538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 796848-1 797538 bp Feature: gene Location: 1797899-1799176 bp Ori: ADO69282.1 Feature: domain Description: Lactonase Location: 1798028-1799063 bp Feature: domain Description: Lactonase Location: 1 798028-1 799063 bp Feature: gene Location: 1799268-1799990 bp Ori: ADO69283.1 Feature: domain Description: DUF2652 Location: 1799370-1799712 bp Feature: domain Description: DUF2652 Location: 1 799370-1 79971 2 bp Feature: gene Location: 3083656-3084429 bp Feature: gene Location: 3084521-3086659 bp Ori: ADO70312.1 Feature: domain Description: DUF262 Location: 3084557-3085490 bp Feature: domain Description: DUF262 Location: 3084557-3085490 bp Feature: gene Location: 3086749-3088395 bp Ori: ADO70313.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3087046-3087847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3087046-3087847 bp Feature: domain Description: GIIM Note: maturase Location: 3087919-3088153 bp Feature: domain Description: GIIM Note: maturase Location: 308791 9-30881 53 bp Feature: gene Location: 3088554-3088802 bp Feature: gene Location: 3088973-3089440 bp Ori: ADO70315.1 Feature: domain Description: Phage_T4_gp19 Location: 3089012-3089423 bp Feature: domain Description: Phage_T4_gp1 9 Location: 308901 2-3089423 bp Feature: gene Location: 3186808-3186999 bp Feature: gene Location: 3186996-3187769 bp Feature: gene Location: 3188565-3190136 bp Ori: ADO70419.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3189024-3189825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 89024-31 89825 bp Feature: domain Description: GIIM Note: maturase Location: 3189897-3190131 bp Feature: domain Description: GIIM Note: maturase Location: 31 89897-31 901 31 bp Feature: gene Location: 3190552-3191019 bp Ori: ADO70420.1 Feature: domain Description: Phage_T4_gp19 Location: 3190591-3191002 bp Feature: domain Description: Phage_T4_gp1 9 Location: 31 90591 -31 91 002 bp Feature: gene Location: 3191031-3193247 bp Ori: ADO70421.1 Feature: domain Description: 18 Location: 3191046-3191310 bp Feature: domain Description: 1 8 Location: 31 91 046-31 91 31 0 bp Feature: domain Description: COG3497 Location: 3192351-3193221 bp Feature: domain Description: COG3497 Location: 31 92351 -31 93221 bp Feature: gene Location: 3734273-3735373 bp Feature: gene Location: 3735662-3736471 bp Ori: ADO70891.1 Feature: domain Description: COG3293 Location: 3735677-3736004 bp Feature: domain Description: COG3293 Location: 3735677-3736004 bp Feature: domain Description: COG3293 Location: 3736061-3736436 bp Feature: domain Description: COG3293 Location: 3736061 -3736436 bp Feature: gene Location: 3736608-3737960 bp Ori: ADO70892.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3736899-3737586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3736899-3737586 bp Feature: gene Location: 3739184-3739528 bp Ori: ADO70893.1 Feature: domain Description: TnpB_IS66 Location: 3739211-3739493 bp Feature: domain Description: TnpB_IS66 Location: 373921 1 -3739493 bp Feature: gene Location: 3739522-3739899 bp Ori: ADO70894.1 Feature: domain Description: HTH_Tnp_1 Location: 3739585-3739774 bp Feature: domain Description: HTH_Tnp_1 Location: 3739585-3739774 bp Feature: gene Location: 4701796-4702707 bp Feature: gene Location: 4703172-4704248 bp Feature: gene Location: 4704603-4706441 bp Ori: ADO71713.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4705359-4706049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4705359-4706049 bp Feature: gene Location: 4706628-4708241 bp Ori: ADO71714.1 Feature: domain Description: DUF772 Location: 4706799-4707027 bp Feature: domain Description: DUF772 Location: 4706799-4707027 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4707894-4708191 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 4707894-47081 91 bp Feature: gene Location: 4708241-4709776 bp Ori: ADO71715.1 Feature: domain Description: SF2_C_Ski2 Location: 4708403-4708817 bp Feature: domain Description: SF2_C_Ski2 Location: 4708403-470881 7 bp Feature: gene Location: 9438147-9438572 bp Feature: gene Location: 9438976-9439443 bp Feature: gene Location: 9439667-9441505 bp Ori: ADO75477.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9440423-9441113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9440423-9441 1 1 3 bp Feature: gene Location: 9441766-9442374 bp Ori: ADO75478.1 Feature: domain Description: Methyltransf_25 Location: 9441907-9442159 bp Feature: domain Description: Methyltransf_25 Location: 9441 907-94421 59 bp Feature: gene Location: 9442454-9442711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ClC_sycA_like (cd03682), ELWxxDGT_rpt (TIGR04534), RVT-Retrons, WGR_MMR_like (cd07996), WD40 (smart00320), HEAT_2 (pfam13646), UDG_F3_SMUG, RVT-GII, Lactonase (pfam10282), DUF2652 (pfam10851)
DUF262 (pfam03235), GIIM (pfam08388), Phage_T4_gp19 (pfam06841), 18 (PHA02539), COG3497 (Phage tail sheath protein FI ), COG3293 (Transposase ), TnpB_IS66 (pfam05717), HTH_Tnp_1 (pfam01527), DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751)
SF2_C_Ski2 (cd18795), Methyltransf_25 (pfam13649)