myRT

myRT report for GCA_000172795.2_ASM17279v2

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Seq: CP020950.1 Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence (464024 bp)
Overview 1 RT 1: 105879-109797 bp 2 RT 2: 156878-162930 bp 3 RT 3: 332181-335085 bp Neighborhood of RT #1 [105879, 109797] COG5489 HU_IHF RVT-GII Intron_maturas2 HNHc HU_IHF Neighborhood of RT #2 [156878, 163013] gabD RVT-GII Tar PRK15048 Neighborhood of RT #3 [332181, 335135] Transposase_mut RVT-GII PRK06484 Feature: gene Location: 105879-106193 bp Ori: ARM91133.1 Feature: domain Description: COG5489 Location: 105882-106185 bp Feature: domain Description: COG5489 Location: 1 05882-1 061 85 bp Feature: gene Location: 106356-106589 bp Ori: ARM91134.1 Feature: domain Description: HU_IHF Location: 106455-106575 bp Feature: domain Description: HU_IHF Location: 1 06455-1 06575 bp Feature: gene Location: 106570-108441 bp Ori: ARM91135.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106840-107671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 06840-1 07671 bp Feature: domain Description: Intron_maturas2 Location: 107854-108040 bp Feature: domain Description: Intron_maturas2 Location: 1 07854-1 08040 bp Feature: domain Description: HNHc Note: nucleases Location: 108226-108379 bp Feature: domain Description: HNHc Note: nucleases Location: 1 08226-1 08379 bp Feature: gene Location: 109052-109225 bp Ori: ARM91136.1 Feature: domain Description: HU_IHF Location: 109067-109208 bp Feature: domain Description: HU_IHF Location: 1 09067-1 09208 bp Feature: gene Location: 109630-109797 bp Feature: gene Location: 156878-158365 bp Ori: ARM91192.1 Gene: gabD-2 Feature: domain Description: gabD Location: 156908-158351 bp Feature: domain Description: gabD Location: 1 56908-1 58351 bp Feature: gene Location: 158650-158835 bp Feature: gene Location: 158901-159575 bp Ori: ARM91194.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159117-159561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 591 1 7-1 59561 bp Feature: gene Location: 160136-160786 bp Feature: gene Location: 161004-163013 bp Ori: ARM91196.1 Feature: domain Description: Tar Location: 161460-161973 bp Feature: domain Description: Tar Location: 1 61 460-1 61 973 bp Feature: domain Description: PRK15048 Location: 162000-162930 bp Feature: domain Description: PRK1 5048 Location: 1 62000-1 62930 bp Feature: gene Location: 332181-332636 bp Ori: ARM91358.1 Feature: domain Description: Transposase_mut Location: 332190-332601 bp Feature: domain Description: Transposase_mut Location: 3321 90-332601 bp Feature: gene Location: 333271-333471 bp Feature: gene Location: 333577-333939 bp Ori: ARM91360.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333625-333874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333625-333874 bp Feature: gene Location: 334011-334424 bp Feature: gene Location: 334749-335135 bp Ori: ARM91362.1 Feature: domain Description: PRK06484 Location: 334752-335085 bp Feature: domain Description: PRK06484 Location: 334752-335085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5489 (Uncharacterized conserved protein, DUF736 family ), HU_IHF (cl00257), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), gabD (PRK11241), Tar (COG0840), PRK15048 (methyl-accepting chemotaxis protein II; Provisional), Transposase_mut (pfam00872), PRK06484 (short chain dehydrogenase; Validated)

Seq: CP020949.1 Rhizobium sp. CIAT894 plasmid pRheCIAT894b, complete sequence (273667 bp)
Overview 1 RT 1: 74942-78488 bp Neighborhood of RT #1 [74942, 78517] COG5489 HU_IHF RVT-GII Intron_maturas2 HNHc HU_IHF WGR_MMR_like Feature: gene Location: 74942-75253 bp Ori: ARM90850.1 Feature: domain Description: COG5489 Location: 74945-75251 bp Feature: domain Description: COG5489 Location: 74945-752 51 bp Feature: gene Location: 75299-75505 bp Ori: ARM90851.1 Feature: domain Description: HU_IHF Location: 75368-75491 bp Feature: domain Description: HU_IHF Location: 75368-75491 bp Feature: gene Location: 75513-77384 bp Ori: ARM90852.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75783-76614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75783-76614 bp Feature: domain Description: Intron_maturas2 Location: 76797-76983 bp Feature: domain Description: Intron_maturas2 Location: 76797-76983 bp Feature: domain Description: HNHc Note: nucleases Location: 77169-77322 bp Feature: domain Description: HNHc Note: nucleases Location: 77169-7732 2 bp Feature: gene Location: 77995-78168 bp Ori: ARM90853.1 Feature: domain Description: HU_IHF Location: 78010-78151 bp Feature: domain Description: HU_IHF Location: 78010-78151 bp Feature: gene Location: 78251-78517 bp Ori: ARM90854.1 Feature: domain Description: WGR_MMR_like Location: 78275-78488 bp Feature: domain Description: WGR_MMR_like Location: 782 75-78488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5489 (Uncharacterized conserved protein, DUF736 family ), HU_IHF (cl00257), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), WGR_MMR_like (cd07996)