myRT

myRT report for GCA_000174395.2_ASM17439v2

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Seq: CP003583.1 Enterococcus faecium DO, complete genome (2698137 bp)
Overview 1 RT 1: 1788712-1793450 bp Neighborhood of RT #1 [1788712, 1793527] ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 1788712-1789212 bp Ori: AFK59441.1 Gene: ardA Feature: domain Description: ArdA Location: 1788730-1789201 bp Feature: domain Description: ArdA Location: 1 788730-1 789201 bp Feature: gene Location: 1789225-1789377 bp Feature: gene Location: 1789553-1791463 bp Ori: AFK59443.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1789886-1790624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 789886-1 790624 bp Feature: domain Description: HNHc Note: nucleases Location: 1791179-1791344 bp Feature: domain Description: HNHc Note: nucleases Location: 1 791 1 79-1 791 344 bp Feature: gene Location: 1792209-1792346 bp Ori: AFK59444.1 Feature: domain Description: DUF3789 Location: 1792236-1792329 bp Feature: domain Description: DUF3789 Location: 1 792236-1 792329 bp Feature: gene Location: 1792343-1793527 bp Ori: AFK59445.1 Feature: domain Description: HTH_XRE Location: 1792373-1792517 bp Feature: domain Description: HTH_XRE Location: 1 792373-1 79251 7 bp Feature: domain Description: Rol_Rep_N Location: 1792550-1792814 bp Feature: domain Description: Rol_Rep_N Location: 1 792550-1 79281 4 bp Feature: domain Description: Rep_trans Location: 1792838-1793450 bp Feature: domain Description: Rep_trans Location: 1 792838-1 793450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), DUF3789 (pfam12664), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: CP003584.1 Enterococcus faecium DO plasmid 1, complete sequence (36262 bp)
Overview 1 RT 1: 23851-28853 bp Neighborhood of RT #1 [23851, 28867] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 23851-24003 bp Feature: gene Location: 24026-25231 bp Ori: AFK60362.1 Feature: domain Description: HTH_XRE Location: 24071-24215 bp Feature: domain Description: HTH_XRE Location: 2 4071-2 42 15 bp Feature: domain Description: Rol_Rep_N Location: 24242-24509 bp Feature: domain Description: Rol_Rep_N Location: 2 42 42 -2 4509 bp Feature: domain Description: Rep_trans Location: 24533-25142 bp Feature: domain Description: Rep_trans Location: 2 4533-2 5142 bp Feature: gene Location: 26015-27925 bp Ori: AFK60363.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26348-27086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6348-2 7086 bp Feature: domain Description: HNHc Note: nucleases Location: 27641-27806 bp Feature: domain Description: HNHc Note: nucleases Location: 2 7641-2 7806 bp Feature: gene Location: 28086-28253 bp Feature: gene Location: 28370-28867 bp Ori: AFK60365.1 Gene: adrA Feature: domain Description: ArdA Location: 28388-28853 bp Feature: domain Description: ArdA Location: 2 8388-2 8853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275)