myRT

myRT report for GCA_000175295.2_ASM17529v2

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Seq: CP002466.1 Thermoanaerobacter brockii subsp. finnii Ako-1, complete genome (2344824 bp)
Overview 1 RT 1: 44147-48873 bp 2 RT 2: 89104-95830 bp 3 RT 3: 141271-148044 bp 4 RT 4: 174530-180946 bp 5 RT 5: 548263-554148 bp 6 RT 6: 929193-935042 bp 7 RT 7: 1015950-1023335 bp 8 RT 8: 1459375-1464104 bp 9 RT 9: 1798570-1804868 bp 10 RT 10: 1908062-1915154 bp Neighborhood of RT #1 [44147, 48902] RVT-GII GIIM arc_metj MobL Neighborhood of RT #2 [89104, 95838] ComEC COG4198 RVT-GII GIIM M1_APN_like PRK06835 Neighborhood of RT #3 [141271, 148052] mycofact_OYE_2 YycJ-like_MBL-fold RVT-GII GIIM PRK04435 PRK06349 Neighborhood of RT #4 [174530, 180954] glmU PRK01259 RVT-GII GIIM OmpR HK_WalK PRK11360 Neighborhood of RT #5 [548263, 554162] PRK02083 PRK02759 RVT-GII GIIM glyA Peptidase_M19 Neighborhood of RT #6 [929193, 935065] Thiamine_BP PGA_cap RVT-GII GIIM PRK13570 PRK14607 Neighborhood of RT #7 [1015950, 1023379] mycofact_OYE_2 mycofact_OYE_2 pro_imino_pep_2 pro_imino_pep_2 RVT-GII GIIM M48A_Zmpste24p_like B12_SAM_MJ_1487 DUF4080 Neighborhood of RT #8 [1459375, 1464148] YqeK nadD RVT-GII GIIM obgE SPOB_a Neighborhood of RT #9 [1798570, 1804870] HisM PBP2_GltS RVT-GII GIIM zf-trcl PDC1_MCP_like Tar Neighborhood of RT #10 [1908062, 1915312] PldB DUF429 RVT-GII GIIM ExeA HTH_32 rve Mu-transpos_C Feature: gene Location: 44147-44476 bp Feature: gene Location: 44523-45167 bp Feature: gene Location: 45623-47035 bp Ori: ADV78684.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45971-46589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45971 -46589 bp Feature: domain Description: GIIM Note: maturase Location: 46640-46865 bp Feature: domain Description: GIIM Note: maturase Location: 46640-46865 bp Feature: gene Location: 47356-47724 bp Ori: ADV78685.1 Feature: domain Description: arc_metj Location: 47359-47482 bp Feature: domain Description: arc_metj Location: 47359-47482 bp Feature: gene Location: 47721-48902 bp Ori: ADV78686.1 Feature: domain Description: MobL Location: 47742-48873 bp Feature: domain Description: MobL Location: 47742-48873 bp Feature: gene Location: 89104-90060 bp Ori: ADV78734.1 Feature: domain Description: ComEC Location: 89203-90031 bp Feature: domain Description: ComEC Location: 89203-90031 bp Feature: gene Location: 90147-91394 bp Ori: ADV78735.1 Feature: domain Description: COG4198 Location: 90156-91389 bp Feature: domain Description: COG41 98 Location: 901 56-91 389 bp Feature: gene Location: 91847-93259 bp Ori: ADV78736.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92195-92813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921 95-9281 3 bp Feature: domain Description: GIIM Note: maturase Location: 92864-93089 bp Feature: domain Description: GIIM Note: maturase Location: 92864-93089 bp Feature: gene Location: 93416-94858 bp Ori: ADV78737.1 Feature: domain Description: M1_APN_like Location: 93515-94853 bp Feature: domain Description: M1 _APN_like Location: 9351 5-94853 bp Feature: gene Location: 94855-95838 bp Ori: ADV78738.1 Feature: domain Description: PRK06835 Location: 94858-95830 bp Feature: domain Description: PRK06835 Location: 94858-95830 bp Feature: gene Location: 141271-143196 bp Ori: ADV78771.1 Feature: domain Description: mycofact_OYE_2 Location: 141280-143194 bp Feature: domain Description: mycofact_OYE_2 Location: 1 41 280-1 431 94 bp Feature: gene Location: 143457-144236 bp Ori: ADV78772.1 Feature: domain Description: YycJ-like_MBL-fold Location: 143472-144030 bp Feature: domain Description: YycJ-like_MBL-fold Location: 1 43472-1 44030 bp Feature: gene Location: 144691-146103 bp Ori: ADV78773.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145039-145657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 45039-1 45657 bp Feature: domain Description: GIIM Note: maturase Location: 145708-145933 bp Feature: domain Description: GIIM Note: maturase Location: 1 45708-1 45933 bp Feature: gene Location: 146343-146783 bp Ori: ADV78774.1 Feature: domain Description: PRK04435 Location: 146352-146778 bp Feature: domain Description: PRK04435 Location: 1 46352-1 46778 bp Feature: gene Location: 146796-148052 bp Ori: ADV78775.1 Feature: domain Description: PRK06349 Location: 146799-148044 bp Feature: domain Description: PRK06349 Location: 1 46799-1 48044 bp Feature: gene Location: 174530-175903 bp Ori: ADV78795.1 Feature: domain Description: glmU Location: 174545-175889 bp Feature: domain Description: glmU Location: 1 74545-1 75889 bp Feature: gene Location: 175909-176859 bp Ori: ADV78796.1 Feature: domain Description: PRK01259 Location: 175933-176854 bp Feature: domain Description: PRK01 259 Location: 1 75933-1 76854 bp Feature: gene Location: 177304-178716 bp Ori: ADV78797.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177652-178270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 77652-1 78270 bp Feature: domain Description: GIIM Note: maturase Location: 178321-178546 bp Feature: domain Description: GIIM Note: maturase Location: 1 78321 -1 78546 bp Feature: gene Location: 178856-179539 bp Ori: ADV78798.1 Feature: domain Description: OmpR Location: 178874-179534 bp Feature: domain Description: OmpR Location: 1 78874-1 79534 bp Feature: gene Location: 179542-180954 bp Ori: ADV78799.1 Feature: domain Description: HK_WalK Location: 179569-180268 bp Feature: domain Description: HK_WalK Location: 1 79569-1 80268 bp Feature: domain Description: PRK11360 Location: 180295-180946 bp Feature: domain Description: PRK1 1 360 Location: 1 80295-1 80946 bp Feature: gene Location: 548263-549024 bp Ori: ADV79139.1 Feature: domain Description: PRK02083 Location: 548266-549022 bp Feature: domain Description: PRK02083 Location: 548266-549022 bp Feature: gene Location: 549047-549706 bp Ori: ADV79140.1 Feature: domain Description: PRK02759 Location: 549056-549656 bp Feature: domain Description: PRK02759 Location: 549056-549656 bp Feature: gene Location: 550158-551570 bp Ori: ADV79141.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 550506-551124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 550506-551 1 24 bp Feature: domain Description: GIIM Note: maturase Location: 551175-551400 bp Feature: domain Description: GIIM Note: maturase Location: 551 1 75-551 400 bp Feature: gene Location: 551651-552892 bp Ori: ADV79142.1 Feature: domain Description: glyA Location: 551663-552881 bp Feature: domain Description: glyA Location: 551 663-552881 bp Feature: gene Location: 553221-554162 bp Ori: ADV79143.1 Feature: domain Description: Peptidase_M19 Location: 553233-554148 bp Feature: domain Description: Peptidase_M1 9 Location: 553233-5541 48 bp Feature: gene Location: 929193-929486 bp Ori: ADV79491.1 Feature: domain Description: Thiamine_BP Location: 929214-929478 bp Feature: domain Description: Thiamine_BP Location: 92921 4-929478 bp Feature: gene Location: 929519-930697 bp Ori: ADV79492.1 Feature: domain Description: PGA_cap Location: 929672-930434 bp Feature: domain Description: PGA_cap Location: 929672-930434 bp Feature: gene Location: 931542-932954 bp Ori: ADV79493.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931890-932508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931 890-932508 bp Feature: domain Description: GIIM Note: maturase Location: 932559-932784 bp Feature: domain Description: GIIM Note: maturase Location: 932559-932784 bp Feature: gene Location: 933051-934478 bp Ori: ADV79494.1 Feature: domain Description: PRK13570 Location: 933105-934473 bp Feature: domain Description: PRK1 3570 Location: 9331 05-934473 bp Feature: gene Location: 934478-935065 bp Ori: ADV79495.1 Feature: domain Description: PRK14607 Location: 934481-935042 bp Feature: domain Description: PRK1 4607 Location: 934481 -935042 bp Feature: gene Location: 1015950-1017770 bp Ori: ADV79562.1 Feature: domain Description: mycofact_OYE_2 Location: 1015959-1016253 bp Feature: domain Description: mycofact_OYE_2 Location: 1 01 5959-1 01 6253 bp Feature: domain Description: mycofact_OYE_2 Location: 1016268-1017762 bp Feature: domain Description: mycofact_OYE_2 Location: 1 01 6268-1 01 7762 bp Feature: gene Location: 1017782-1018372 bp Ori: ADV79563.1 Feature: domain Description: pro_imino_pep_2 Location: 1017800-1018154 bp Feature: domain Description: pro_imino_pep_2 Location: 1 01 7800-1 01 81 54 bp Feature: domain Description: pro_imino_pep_2 Location: 1018169-1018367 bp Feature: domain Description: pro_imino_pep_2 Location: 1 01 81 69-1 01 8367 bp Feature: gene Location: 1018830-1020242 bp Ori: ADV79564.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1019178-1019796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 91 78-1 01 9796 bp Feature: domain Description: GIIM Note: maturase Location: 1019847-1020072 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 9847-1 020072 bp Feature: gene Location: 1020306-1021544 bp Ori: ADV79565.1 Feature: domain Description: M48A_Zmpste24p_like Location: 1020408-1021521 bp Feature: domain Description: M48A_Zmpste24p_like Location: 1 020408-1 021 521 bp Feature: gene Location: 1021691-1023379 bp Ori: ADV79566.1 Feature: domain Description: B12_SAM_MJ_1487 Location: 1021814-1022768 bp Feature: domain Description: B1 2_SAM_MJ_1 487 Location: 1 021 81 4-1 022768 bp Feature: domain Description: DUF4080 Location: 1022777-1023335 bp Feature: domain Description: DUF4080 Location: 1 022777-1 023335 bp Feature: gene Location: 1459375-1459947 bp Ori: ADV80029.1 Feature: domain Description: YqeK Location: 1459393-1459933 bp Feature: domain Description: YqeK Location: 1 459393-1 459933 bp Feature: gene Location: 1459937-1460572 bp Ori: ADV80030.1 Feature: domain Description: nadD Location: 1459949-1460549 bp Feature: domain Description: nadD Location: 1 459949-1 460549 bp Feature: gene Location: 1460749-1462161 bp Ori: ADV80031.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1461097-1461715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 461 097-1 461 71 5 bp Feature: domain Description: GIIM Note: maturase Location: 1461766-1461991 bp Feature: domain Description: GIIM Note: maturase Location: 1 461 766-1 461 991 bp Feature: gene Location: 1462613-1463884 bp Ori: ADV80032.1 Feature: domain Description: obgE Location: 1462619-1463879 bp Feature: domain Description: obgE Location: 1 46261 9-1 463879 bp Feature: gene Location: 1463933-1464148 bp Ori: ADV80033.1 Feature: domain Description: SPOB_a Location: 1463945-1464104 bp Feature: domain Description: SPOB_a Location: 1 463945-1 4641 04 bp Feature: gene Location: 1798570-1799232 bp Ori: ADV80344.1 Feature: domain Description: HisM Location: 1798588-1799218 bp Feature: domain Description: HisM Location: 1 798588-1 79921 8 bp Feature: gene Location: 1799297-1800082 bp Ori: ADV80345.1 Feature: domain Description: PBP2_GltS Location: 1799402-1800068 bp Feature: domain Description: PBP2_GltS Location: 1 799402-1 800068 bp Feature: gene Location: 1800432-1801844 bp Ori: ADV80346.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1800780-1801398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 800780-1 801 398 bp Feature: domain Description: GIIM Note: maturase Location: 1801449-1801674 bp Feature: domain Description: GIIM Note: maturase Location: 1 801 449-1 801 674 bp Feature: gene Location: 1802334-1802531 bp Ori: ADV80347.1 Feature: domain Description: zf-trcl Location: 1802343-1802481 bp Feature: domain Description: zf-trcl Location: 1 802343-1 802481 bp Feature: gene Location: 1802762-1804870 bp Ori: ADV80348.1 Feature: domain Description: PDC1_MCP_like Location: 1802963-1803437 bp Feature: domain Description: PDC1 _MCP_like Location: 1 802963-1 803437 bp Feature: domain Description: Tar Location: 1803446-1804868 bp Feature: domain Description: Tar Location: 1 803446-1 804868 bp Feature: gene Location: 1908062-1909006 bp Ori: ADV80440.1 Feature: domain Description: PldB Location: 1908095-1908983 bp Feature: domain Description: PldB Location: 1 908095-1 908983 bp Feature: gene Location: 1909042-1909797 bp Ori: ADV80441.1 Feature: domain Description: DUF429 Location: 1909069-1909717 bp Feature: domain Description: DUF429 Location: 1 909069-1 90971 7 bp Feature: gene Location: 1911305-1912717 bp Ori: ADV80442.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1911653-1912271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 1 653-1 91 2271 bp Feature: domain Description: GIIM Note: maturase Location: 1912322-1912547 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 2322-1 91 2547 bp Feature: gene Location: 1913170-1913970 bp Ori: ADV80443.1 Feature: domain Description: ExeA Location: 1913176-1913941 bp Feature: domain Description: ExeA Location: 1 91 31 76-1 91 3941 bp Feature: gene Location: 1913987-1915312 bp Ori: ADV80444.1 Feature: domain Description: HTH_32 Location: 1914152-1914383 bp Feature: domain Description: HTH_32 Location: 1 91 41 52-1 91 4383 bp Feature: domain Description: rve Location: 1914458-1914797 bp Feature: domain Description: rve Location: 1 91 4458-1 91 4797 bp Feature: domain Description: Mu-transpos_C Location: 1914989-1915154 bp Feature: domain Description: Mu-transpos_C Location: 1 91 4989-1 91 51 54 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), arc_metj (LOAD_arc_metj), MobL (pfam18555), ComEC (COG2333), COG4198 (Uncharacterized conserved protein, DUF1015 family ), M1_APN_like (cd09604), PRK06835 (DNA replication protein DnaC; Validated), mycofact_OYE_2 (TIGR03997), YycJ-like_MBL-fold (cd07733)
PRK04435 (ACT domain-containing protein), PRK06349 (homoserine dehydrogenase; Provisional), glmU (TIGR01173), PRK01259 (ribose-phosphate diphosphokinase), OmpR (COG0745), HK_WalK (NF033092), PRK11360 (two-component system sensor histidine kinase AtoS), PRK02083 (imidazole glycerol phosphate synthase subunit HisF; Provisional), PRK02759 (bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE), glyA (PRK00011)
Peptidase_M19 (pfam01244), Thiamine_BP (pfam01910), PGA_cap (smart00854), PRK13570 (anthranilate synthase component I; Provisional), PRK14607 (bifunctional anthranilate synthase component II/anthranilate phosphoribosyltransferase), pro_imino_pep_2 (TIGR01250), M48A_Zmpste24p_like (cd07343), B12_SAM_MJ_1487 (TIGR04013), DUF4080 (pfam13311), YqeK (COG1713)
nadD (PRK07152), obgE (PRK12299), SPOB_a (pfam14689), HisM (COG0765), PBP2_GltS (cd13620), zf-trcl (pfam13451), PDC1_MCP_like (cd12913), Tar (COG0840), PldB (COG2267), DUF429 (pfam04250)
ExeA (COG3267), HTH_32 (pfam13565), rve (pfam00665), Mu-transpos_C (pfam09299)