myRT

myRT report for GCA_000176935.3_ASM17693v3

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Seq: CP002519.1 Burkholderia sp. CCGE1001 chromosome 1, complete sequence (4063449 bp)
Overview 1 RT 1: 1197338-1203424 bp Neighborhood of RT #1 [1197338, 1203480] ilvH PRK05479 RVT_N RVT-GII GIIM HNHc PRK05305 PssA Feature: gene Location: 1197338-1197829 bp Ori: ADX54514.1 Feature: domain Description: ilvH Location: 1197341-1197818 bp Feature: domain Description: ilvH Location: 1 1 97341 -1 1 9781 8 bp Feature: gene Location: 1197941-1198957 bp Ori: ADX54515.1 Feature: domain Description: PRK05479 Location: 1197944-1198925 bp Feature: domain Description: PRK05479 Location: 1 1 97944-1 1 98925 bp Feature: gene Location: 1200130-1201830 bp Ori: ADX54516.1 Feature: domain Description: RVT_N Location: 1200187-1200430 bp Feature: domain Description: RVT_N Location: 1 2001 87-1 200430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1200475-1201123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 200475-1 201 1 23 bp Feature: domain Description: GIIM Note: maturase Location: 1201174-1201408 bp Feature: domain Description: GIIM Note: maturase Location: 1 201 1 74-1 201 408 bp Feature: domain Description: HNHc Note: nucleases Location: 1201651-1201792 bp Feature: domain Description: HNHc Note: nucleases Location: 1 201 651 -1 201 792 bp Feature: gene Location: 1201948-1202586 bp Ori: ADX54517.1 Feature: domain Description: PRK05305 Location: 1201972-1202581 bp Feature: domain Description: PRK05305 Location: 1 201 972-1 202581 bp Feature: gene Location: 1202611-1203480 bp Ori: ADX54518.1 Feature: domain Description: PssA Location: 1202743-1203424 bp Feature: domain Description: PssA Location: 1 202743-1 203424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ilvH (PRK11895), PRK05479 (ketol-acid reductoisomerase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05305 (phosphatidylserine decarboxylase family protein), PssA (COG1183)

Seq: CP012899.1 Burkholderia sp. CCGE1001 plasmid pCCGE1001a, complete sequence (419743 bp)
Overview 1 RT 1: 66476-70141 bp 2 RT 2: 136081-141660 bp 3 RT 3: 175560-180174 bp 4 RT 4: 249841-261993 bp 5 RT 5: 269482-278821 bp Neighborhood of RT #1 [66476, 70347] RVT_N RVT-GII GIIM COG3547 COG3335 Neighborhood of RT #2 [136081, 141773] COG3547 COG3547 InsE RVT_N RVT-GII GIIM TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 Neighborhood of RT #3 [175560, 180287] PRiA4_ORF3 InsE RVT_N RVT-GII GIIM TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 Neighborhood of RT #4 [249841, 262142] PinE PDC1_DGC_like PDC2_DGC_like PleD RVT_N RVT-GII GIIM HTH_23 HTH_32 rve Mu-transpos_C RVT_N RVT-GII GIIM HTH_23 HTH_32 rve Mu-transpos_C Neighborhood of RT #5 [269482, 278821] IS5 RVT-GII GIIM pepcterm_ATPase HTH_32 rve Mu-transpos_C HTH_23 RVT_N RVT-GII GIIM RVT-GII PRK09183 Feature: gene Location: 66476-66598 bp Feature: gene Location: 67185-67547 bp Ori: AMD29100.1 Feature: domain Description: RVT_N Location: 67248-67431 bp Feature: domain Description: RVT_N Location: 672 48-67431 bp Feature: gene Location: 67513-68685 bp Ori: AMD29101.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67537-68179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67537-68179 bp Feature: domain Description: GIIM Note: maturase Location: 68230-68464 bp Feature: domain Description: GIIM Note: maturase Location: 682 30-68464 bp Feature: gene Location: 68981-69202 bp Ori: AMD29102.1 Feature: domain Description: COG3547 Location: 68987-69146 bp Feature: domain Description: COG3547 Location: 68987-69146 bp Feature: gene Location: 69580-70347 bp Ori: AMD29103.1 Feature: domain Description: COG3335 Location: 69769-70141 bp Feature: domain Description: COG3335 Location: 69769-70141 bp Feature: gene Location: 136081-137442 bp Ori: AMD29171.1 Feature: domain Description: COG3547 Location: 136249-136555 bp Feature: domain Description: COG3547 Location: 1362 49-136555 bp Feature: domain Description: COG3547 Location: 136783-137266 bp Feature: domain Description: COG3547 Location: 136783-1372 66 bp Feature: gene Location: 137594-138139 bp Ori: AMD29172.1 Feature: domain Description: InsE Location: 137669-137837 bp Feature: domain Description: InsE Location: 137669-137837 bp Feature: gene Location: 138766-140277 bp Ori: AMD29173.1 Feature: domain Description: RVT_N Location: 138829-139072 bp Feature: domain Description: RVT_N Location: 13882 9-139072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139117-139759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139117-139759 bp Feature: domain Description: GIIM Note: maturase Location: 139810-140044 bp Feature: domain Description: GIIM Note: maturase Location: 139810-140044 bp Feature: gene Location: 140378-140665 bp Ori: AMD29174.1 Feature: domain Description: TnpB_IS66 Location: 140381-140630 bp Feature: domain Description: TnpB_IS66 Location: 140381-140630 bp Feature: gene Location: 140697-141773 bp Ori: AMD29175.1 Feature: domain Description: LZ_Tnp_IS66 Location: 140838-141051 bp Feature: domain Description: LZ_Tnp_IS66 Location: 140838-141051 bp Feature: domain Description: zf-IS66 Location: 141075-141207 bp Feature: domain Description: zf-IS66 Location: 141075-1412 07 bp Feature: domain Description: DDE_Tnp_IS66 Location: 141255-141660 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1412 55-141660 bp Feature: gene Location: 175560-176066 bp Ori: AMD29211.1 Feature: domain Description: PRiA4_ORF3 Location: 175575-176028 bp Feature: domain Description: PRiA4_ORF3 Location: 175575-17602 8 bp Feature: gene Location: 176108-176653 bp Ori: AMD29212.1 Feature: domain Description: InsE Location: 176183-176351 bp Feature: domain Description: InsE Location: 176183-176351 bp Feature: gene Location: 177280-178791 bp Ori: AMD29213.1 Feature: domain Description: RVT_N Location: 177343-177586 bp Feature: domain Description: RVT_N Location: 177343-177586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177631-178273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177631-1782 73 bp Feature: domain Description: GIIM Note: maturase Location: 178324-178558 bp Feature: domain Description: GIIM Note: maturase Location: 17832 4-178558 bp Feature: gene Location: 178892-179179 bp Ori: AMD29214.1 Feature: domain Description: TnpB_IS66 Location: 178895-179144 bp Feature: domain Description: TnpB_IS66 Location: 178895-179144 bp Feature: gene Location: 179211-180287 bp Ori: AMD29215.1 Feature: domain Description: LZ_Tnp_IS66 Location: 179352-179565 bp Feature: domain Description: LZ_Tnp_IS66 Location: 179352 -179565 bp Feature: domain Description: zf-IS66 Location: 179589-179721 bp Feature: domain Description: zf-IS66 Location: 179589-17972 1 bp Feature: domain Description: DDE_Tnp_IS66 Location: 179769-180174 bp Feature: domain Description: DDE_Tnp_IS66 Location: 179769-180174 bp Feature: gene Location: 249841-250470 bp Ori: AMD29302.1 Feature: domain Description: PinE Location: 249907-250444 bp Feature: domain Description: PinE Location: 2 49907-2 50444 bp Feature: gene Location: 250473-251975 bp Ori: AMD29303.1 Gene: cph2 Feature: domain Description: PDC1_DGC_like Location: 250701-251052 bp Feature: domain Description: PDC1_DGC_like Location: 2 50701-2 51052 bp Feature: domain Description: PDC2_DGC_like Location: 251058-251343 bp Feature: domain Description: PDC2 _DGC_like Location: 2 51058-2 51343 bp Feature: domain Description: PleD Location: 251427-251958 bp Feature: domain Description: PleD Location: 2 5142 7-2 51958 bp Feature: gene Location: 252410-253909 bp Ori: AMD29304.1 Feature: domain Description: RVT_N Location: 252473-252710 bp Feature: domain Description: RVT_N Location: 2 52 473-2 52 710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252761-253403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 52 761-2 53403 bp Feature: domain Description: GIIM Note: maturase Location: 253454-253688 bp Feature: domain Description: GIIM Note: maturase Location: 2 53454-2 53688 bp Feature: gene Location: 254534-255109 bp Ori: AMD29305.1 Feature: domain Description: HTH_23 Location: 254852-254954 bp Feature: domain Description: HTH_2 3 Location: 2 54852 -2 54954 bp Feature: gene Location: 255239-256558 bp Ori: AMD29306.1 Feature: domain Description: HTH_32 Location: 255407-255632 bp Feature: domain Description: HTH_32 Location: 2 55407-2 55632 bp Feature: domain Description: rve Location: 255710-256055 bp Feature: domain Description: rve Location: 2 55710-2 56055 bp Feature: domain Description: Mu-transpos_C Location: 256247-256409 bp Feature: domain Description: Mu-transpos_C Location: 2 562 47-2 56409 bp Feature: gene Location: 257352-257492 bp Feature: gene Location: 257525-257824 bp Feature: gene Location: 257995-259494 bp Ori: AMD29310.1 Feature: domain Description: RVT_N Location: 258058-258295 bp Feature: domain Description: RVT_N Location: 2 58058-2 582 95 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258346-258988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 58346-2 58988 bp Feature: domain Description: GIIM Note: maturase Location: 259039-259273 bp Feature: domain Description: GIIM Note: maturase Location: 2 59039-2 592 73 bp Feature: gene Location: 260118-260693 bp Ori: AMD29311.1 Feature: domain Description: HTH_23 Location: 260436-260538 bp Feature: domain Description: HTH_2 3 Location: 2 60436-2 60538 bp Feature: gene Location: 260823-262142 bp Ori: AMD29312.1 Feature: domain Description: HTH_32 Location: 260991-261216 bp Feature: domain Description: HTH_32 Location: 2 60991-2 612 16 bp Feature: domain Description: rve Location: 261294-261639 bp Feature: domain Description: rve Location: 2 612 94-2 61639 bp Feature: domain Description: Mu-transpos_C Location: 261831-261993 bp Feature: domain Description: Mu-transpos_C Location: 2 61831-2 61993 bp Feature: gene Location: 269482-270069 bp Ori: AMD29324.1 Feature: domain Description: IS5 Location: 269488-270037 bp Feature: domain Description: IS5 Location: 2 69488-2 70037 bp Feature: gene Location: 270060-270188 bp Feature: gene Location: 270385-271242 bp Ori: AMD29326.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 270655-270862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 70655-2 70862 bp Feature: domain Description: GIIM Note: maturase Location: 270937-271156 bp Feature: domain Description: GIIM Note: maturase Location: 2 70937-2 71156 bp Feature: gene Location: 271275-271415 bp Feature: gene Location: 271412-272056 bp Ori: AMD29328.1 Gene: exeA4 Feature: domain Description: pepcterm_ATPase Location: 271418-272048 bp Feature: domain Description: pepcterm_ATPase Location: 2 71418-2 72 048 bp Feature: gene Location: 272210-273529 bp Ori: AMD29329.1 Feature: domain Description: HTH_32 Location: 272378-272603 bp Feature: domain Description: HTH_32 Location: 2 72 378-2 72 603 bp Feature: domain Description: rve Location: 272681-273026 bp Feature: domain Description: rve Location: 2 72 681-2 7302 6 bp Feature: domain Description: Mu-transpos_C Location: 273218-273380 bp Feature: domain Description: Mu-transpos_C Location: 2 732 18-2 73380 bp Feature: gene Location: 273659-274234 bp Ori: AMD29330.1 Feature: domain Description: HTH_23 Location: 273977-274079 bp Feature: domain Description: HTH_2 3 Location: 2 73977-2 74079 bp Feature: gene Location: 274859-276358 bp Ori: AMD29331.1 Feature: domain Description: RVT_N Location: 274922-275159 bp Feature: domain Description: RVT_N Location: 2 7492 2 -2 75159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 275210-275852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 752 10-2 75852 bp Feature: domain Description: GIIM Note: maturase Location: 275903-276137 bp Feature: domain Description: GIIM Note: maturase Location: 2 75903-2 76137 bp Feature: gene Location: 276529-277170 bp Ori: AMD29332.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276706-277132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 76706-2 77132 bp Feature: gene Location: 277252-278046 bp Ori: AMD29333.1 Feature: domain Description: PRK09183 Location: 277321-278020 bp Feature: domain Description: PRK09183 Location: 2 7732 1-2 7802 0 bp Feature: gene Location: 278033-278821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), COG3335 (Transposase ), InsE (COG2963), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)
PRiA4_ORF3 (pfam07929), PinE (COG1961), PDC1_DGC_like (cd12914), PDC2_DGC_like (cd12915), PleD (COG3706), HTH_23 (pfam13384), HTH_32 (pfam13565), rve (pfam00665), Mu-transpos_C (pfam09299), IS5 (COG3039)
pepcterm_ATPase (TIGR03015), PRK09183 (transposase/IS protein; Provisional)