myRT

myRT report for GCA_000177615.2_ASM17761v2

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Seq: CP002801.1 Frankia symbiont of Datisca glomerata, complete genome (5323186 bp)
Overview 1 RT 1: 144308-149773 bp 2 RT 2: 1954809-1966327 bp 3 RT 3: 2491808-2496688 bp 4 RT 4: 2908006-2914272 bp 5 RT 5: 3239387-3243686 bp Neighborhood of RT #1 [144308, 149805] rve_2 RVT-GII GIIM RVT-GII Intron_maturas2 HNHc InsE PHA02517 Neighborhood of RT #2 [1954809, 1966407] DDE_Tnp_ISAZ013 InsE RVT-GII GIIM PHA02517 RVT-GII Intron_maturas2 HNHc RVT-GII GIIM Methyltransf_23 MATE_Wzx_like MATE_Wzx_like Neighborhood of RT #3 [2491808, 2496789] BetA BetA COG3293 COG3293 RVT-GII GIIM Neighborhood of RT #4 [2908006, 2914745] InsE PHA02517 RVT-GII GIIM WD40 Neighborhood of RT #5 [3239387, 3243688] Nterm_IS4 DDE_Tnp_1 RVT-GII zf-IS66 DDE_Tnp_IS66 InsE Feature: gene Location: 144308-144493 bp Feature: gene Location: 144494-144751 bp Ori: AEH07684.1 Feature: domain Description: rve_2 Location: 144560-144719 bp Feature: domain Description: rve_2 Location: 1 44560-1 4471 9 bp Feature: gene Location: 145290-146567 bp Ori: AEH07685.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145506-146163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 45506-1 461 63 bp Feature: domain Description: GIIM Note: maturase Location: 146241-146466 bp Feature: domain Description: GIIM Note: maturase Location: 1 46241 -1 46466 bp Feature: gene Location: 147120-148913 bp Ori: AEH07686.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147381-148179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 47381 -1 481 79 bp Feature: domain Description: Intron_maturas2 Location: 148296-148515 bp Feature: domain Description: Intron_maturas2 Location: 1 48296-1 4851 5 bp Feature: domain Description: HNHc Note: nucleases Location: 148689-148872 bp Feature: domain Description: HNHc Note: nucleases Location: 1 48689-1 48872 bp Feature: gene Location: 149805-150062 bp Ori: AEH07687.1 Feature: domain Description: InsE Location: 149820-150060 bp Feature: domain Description: InsE Location: 1 49820-1 50060 bp Feature: gene Location: 149014-149805 bp Ori: AEH07687.1 Feature: domain Description: PHA02517 Location: 149140-149773 bp Feature: domain Description: PHA0251 7 Location: 1 491 40-1 49773 bp Feature: gene Location: 1954809-1955987 bp Ori: AEH09115.1 Feature: domain Description: DDE_Tnp_ISAZ013 Location: 1955052-1955973 bp Feature: domain Description: DDE_Tnp_ISAZ01 3 Location: 1 955052-1 955973 bp Feature: gene Location: 1956234-1956611 bp Ori: AEH09116.1 Feature: domain Description: InsE Location: 1956249-1956552 bp Feature: domain Description: InsE Location: 1 956249-1 956552 bp Feature: gene Location: 1957176-1958612 bp Ori: AEH09117.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1957497-1958187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 957497-1 9581 87 bp Feature: domain Description: GIIM Note: maturase Location: 1958256-1958490 bp Feature: domain Description: GIIM Note: maturase Location: 1 958256-1 958490 bp Feature: gene Location: 1958821-1959498 bp Ori: AEH09118.1 Feature: domain Description: PHA02517 Location: 1958827-1959466 bp Feature: domain Description: PHA0251 7 Location: 1 958827-1 959466 bp Feature: gene Location: 1959599-1961392 bp Ori: AEH09119.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1959860-1960658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 959860-1 960658 bp Feature: domain Description: Intron_maturas2 Location: 1960775-1960994 bp Feature: domain Description: Intron_maturas2 Location: 1 960775-1 960994 bp Feature: domain Description: HNHc Note: nucleases Location: 1961168-1961351 bp Feature: domain Description: HNHc Note: nucleases Location: 1 961 1 68-1 961 351 bp Feature: gene Location: 1961959-1963224 bp Ori: AEH09120.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1962175-1962835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9621 75-1 962835 bp Feature: domain Description: GIIM Note: maturase Location: 1962934-1963150 bp Feature: domain Description: GIIM Note: maturase Location: 1 962934-1 9631 50 bp Feature: gene Location: 1964273-1965079 bp Ori: AEH09121.1 Feature: domain Description: Methyltransf_23 Location: 1964372-1964834 bp Feature: domain Description: Methyltransf_23 Location: 1 964372-1 964834 bp Feature: gene Location: 1965157-1966407 bp Ori: AEH09122.1 Feature: domain Description: MATE_Wzx_like Location: 1965244-1965979 bp Feature: domain Description: MATE_Wzx_like Location: 1 965244-1 965979 bp Feature: domain Description: MATE_Wzx_like Location: 1966039-1966327 bp Feature: domain Description: MATE_Wzx_like Location: 1 966039-1 966327 bp Feature: gene Location: 2491808-2493226 bp Ori: AEH09517.1 Feature: domain Description: BetA Location: 2491826-2491931 bp Feature: domain Description: BetA Location: 2491 826-2491 931 bp Feature: domain Description: BetA Location: 2492882-2493221 bp Feature: domain Description: BetA Location: 2492882-2493221 bp Feature: gene Location: 2493925-2494791 bp Ori: AEH09518.1 Feature: domain Description: COG3293 Location: 2493949-2494282 bp Feature: domain Description: COG3293 Location: 2493949-2494282 bp Feature: domain Description: COG3293 Location: 2494333-2494609 bp Feature: domain Description: COG3293 Location: 2494333-2494609 bp Feature: gene Location: 2495512-2496789 bp Ori: AEH09519.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2495728-2496385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2495728-2496385 bp Feature: domain Description: GIIM Note: maturase Location: 2496463-2496688 bp Feature: domain Description: GIIM Note: maturase Location: 2496463-2496688 bp Feature: gene Location: 2908006-2908263 bp Ori: AEH09827.1 Feature: domain Description: InsE Location: 2908021-2908261 bp Feature: domain Description: InsE Location: 2908021 -2908261 bp Feature: gene Location: 2908263-2909204 bp Ori: AEH09827.1 Feature: domain Description: PHA02517 Location: 2908389-2909175 bp Feature: domain Description: PHA0251 7 Location: 2908389-29091 75 bp Feature: gene Location: 2910652-2911929 bp Ori: AEH09828.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2910868-2911525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 0868-291 1 525 bp Feature: domain Description: GIIM Note: maturase Location: 2911603-2911828 bp Feature: domain Description: GIIM Note: maturase Location: 291 1 603-291 1 828 bp Feature: gene Location: 2912665-2912934 bp Feature: gene Location: 2913120-2914745 bp Ori: AEH09830.1 Feature: domain Description: WD40 Location: 2913342-2914272 bp Feature: domain Description: WD40 Location: 291 3342-291 4272 bp Feature: gene Location: 3239387-3240622 bp Ori: AEH10069.1 Feature: domain Description: Nterm_IS4 Location: 3239426-3239717 bp Feature: domain Description: Nterm_IS4 Location: 3239426-323971 7 bp Feature: domain Description: DDE_Tnp_1 Location: 3239771-3240491 bp Feature: domain Description: DDE_Tnp_1 Location: 3239771 -3240491 bp Feature: gene Location: 3240805-3241542 bp Ori: AEH10070.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3241066-3241504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3241 066-3241 504 bp Feature: gene Location: 3242441-3243418 bp Ori: AEH10071.1 Feature: domain Description: zf-IS66 Location: 3242765-3242894 bp Feature: domain Description: zf-IS66 Location: 3242765-3242894 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3242942-3243371 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3242942-3243371 bp Feature: gene Location: 3243431-3243688 bp Ori: AEH10072.1 Feature: domain Description: InsE Location: 3243446-3243686 bp Feature: domain Description: InsE Location: 3243446-3243686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), RVT-GII, GIIM (pfam08388), Intron_maturas2 (pfam01348), HNHc (smart00507), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_ISAZ013 (pfam07592), Methyltransf_23 (pfam13489), MATE_Wzx_like (cd13128)
BetA (COG2303), COG3293 (Transposase ), WD40 (smart00320), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)