myRT

myRT report for GCA_000178875.2_ASM17887v2

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Seq: CP002383.1 Shewanella baltica OS678, complete genome (5288069 bp)
Overview 1 RT 1: 1055646-1061991 bp 2 RT 2: 1162646-1168911 bp 3 RT 3: 2918699-2926558 bp 4 RT 4: 3488343-3494662 bp 5 RT 5: 4062464-4068070 bp 6 RT 6: 4265042-4274264 bp 7 RT 7: 4967558-4971292 bp Neighborhood of RT #1 [1055646, 1061996] PRK10636 TIGR02443 RVT_N RVT-GII GIIM PRK07478 Neighborhood of RT #2 [1162646, 1168931] PRK10809 RVT_N RVT-GII GIIM RarD Lrp Neighborhood of RT #3 [2918699, 2926558] RVT_N RVT-GII GIIM AAA_15 TOPRIM_OLD Neighborhood of RT #4 [3488343, 3494679] TauE GSDH RVT_N RVT-GII GIIM InsE PHA02517 Neighborhood of RT #5 [4062464, 4068070] COG2932 RVT-UG5 nitrilase Neighborhood of RT #6 [4265042, 4274605] PRK12754 metK RVT_N RVT-GII GIIM CHAT Neighborhood of RT #7 [4967558, 4971315] PRK10358 RVT_N RVT-GII GIIM InsE PHA02517 Feature: gene Location: 1055646-1057559 bp Ori: ADT93100.1 Feature: domain Description: PRK10636 Location: 1055649-1057542 bp Feature: domain Description: PRK1 0636 Location: 1 055649-1 057542 bp Feature: gene Location: 1057783-1058016 bp Ori: ADT93101.1 Feature: domain Description: TIGR02443 Location: 1057828-1057996 bp Feature: domain Description: TIGR02443 Location: 1 057828-1 057996 bp Feature: gene Location: 1058388-1059902 bp Ori: ADT93102.1 Feature: domain Description: RVT_N Location: 1058478-1058721 bp Feature: domain Description: RVT_N Location: 1 058478-1 058721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1058766-1059393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 058766-1 059393 bp Feature: domain Description: GIIM Note: maturase Location: 1059453-1059678 bp Feature: domain Description: GIIM Note: maturase Location: 1 059453-1 059678 bp Feature: gene Location: 1060859-1061047 bp Feature: gene Location: 1061232-1061996 bp Ori: ADT93104.1 Feature: domain Description: PRK07478 Location: 1061235-1061991 bp Feature: domain Description: PRK07478 Location: 1 061 235-1 061 991 bp Feature: gene Location: 1162646-1163185 bp Ori: ADT93184.1 Feature: domain Description: PRK10809 Location: 1162661-1163174 bp Feature: domain Description: PRK1 0809 Location: 1 1 62661 -1 1 631 74 bp Feature: gene Location: 1163946-1165085 bp Feature: gene Location: 1165345-1166859 bp Ori: ADT93186.1 Feature: domain Description: RVT_N Location: 1165435-1165678 bp Feature: domain Description: RVT_N Location: 1 1 65435-1 1 65678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1165723-1166350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 65723-1 1 66350 bp Feature: domain Description: GIIM Note: maturase Location: 1166410-1166635 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 6641 0-1 1 66635 bp Feature: gene Location: 1167469-1168368 bp Ori: ADT93187.1 Feature: domain Description: RarD Location: 1167481-1168342 bp Feature: domain Description: RarD Location: 1 1 67481 -1 1 68342 bp Feature: gene Location: 1168479-1168931 bp Ori: ADT93188.1 Feature: domain Description: Lrp Location: 1168482-1168911 bp Feature: domain Description: Lrp Location: 1 1 68482-1 1 6891 1 bp Feature: gene Location: 2918699-2920942 bp Feature: gene Location: 2921028-2921177 bp Feature: gene Location: 2921351-2922865 bp Ori: ADT94671.1 Feature: domain Description: RVT_N Location: 2921441-2921684 bp Feature: domain Description: RVT_N Location: 2921 441 -2921 684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2921729-2922356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2921 729-2922356 bp Feature: domain Description: GIIM Note: maturase Location: 2922416-2922641 bp Feature: domain Description: GIIM Note: maturase Location: 292241 6-2922641 bp Feature: gene Location: 2923672-2925513 bp Ori: ADT94672.1 Feature: domain Description: AAA_15 Location: 2923681-2924809 bp Feature: domain Description: AAA_1 5 Location: 2923681 -2924809 bp Feature: domain Description: TOPRIM_OLD Location: 2924959-2925208 bp Feature: domain Description: TOPRIM_OLD Location: 2924959-2925208 bp Feature: gene Location: 2925656-2926558 bp Feature: gene Location: 3488343-3489101 bp Ori: ADT95142.1 Feature: domain Description: TauE Location: 3488361-3489084 bp Feature: domain Description: TauE Location: 3488361 -3489084 bp Feature: gene Location: 3489323-3490525 bp Ori: ADT95143.1 Feature: domain Description: GSDH Location: 3489509-3490502 bp Feature: domain Description: GSDH Location: 3489509-3490502 bp Feature: gene Location: 3491756-3493270 bp Ori: ADT95144.1 Feature: domain Description: RVT_N Location: 3491846-3492089 bp Feature: domain Description: RVT_N Location: 3491 846-3492089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3492134-3492761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34921 34-3492761 bp Feature: domain Description: GIIM Note: maturase Location: 3492821-3493046 bp Feature: domain Description: GIIM Note: maturase Location: 3492821 -3493046 bp Feature: gene Location: 3493520-3493810 bp Ori: ADT95145.1 Feature: domain Description: InsE Location: 3493541-3493802 bp Feature: domain Description: InsE Location: 3493541 -3493802 bp Feature: gene Location: 3493870-3494679 bp Ori: ADT95146.1 Feature: domain Description: PHA02517 Location: 3493873-3494662 bp Feature: domain Description: PHA0251 7 Location: 3493873-3494662 bp Feature: gene Location: 4062464-4063153 bp Ori: ADT95650.1 Feature: domain Description: COG2932 Location: 4062515-4063148 bp Feature: domain Description: COG2932 Location: 406251 5-40631 48 bp Feature: gene Location: 4063257-4063730 bp Feature: gene Location: 4063810-4066818 bp Ori: ADT95652.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4064353-4064833 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4064353-4064833 bp Feature: domain Description: nitrilase Location: 4066054-4066744 bp Feature: domain Description: nitrilase Location: 4066054-4066744 bp Feature: gene Location: 4067220-4067582 bp Feature: gene Location: 4067723-4068070 bp Feature: gene Location: 4265042-4267036 bp Ori: ADT95818.1 Feature: domain Description: PRK12754 Location: 4265045-4267031 bp Feature: domain Description: PRK1 2754 Location: 4265045-4267031 bp Feature: gene Location: 4267437-4268588 bp Ori: ADT95819.1 Feature: domain Description: metK Location: 4267452-4268574 bp Feature: domain Description: metK Location: 4267452-4268574 bp Feature: gene Location: 4269143-4270657 bp Ori: ADT95820.1 Feature: domain Description: RVT_N Location: 4269233-4269476 bp Feature: domain Description: RVT_N Location: 4269233-4269476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4269521-4270148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4269521 -42701 48 bp Feature: domain Description: GIIM Note: maturase Location: 4270208-4270433 bp Feature: domain Description: GIIM Note: maturase Location: 4270208-4270433 bp Feature: gene Location: 4271426-4272304 bp Feature: gene Location: 4272449-4274605 bp Ori: ADT95822.1 Feature: domain Description: CHAT Location: 4274096-4274264 bp Feature: domain Description: CHAT Location: 4274096-4274264 bp Feature: gene Location: 4967558-4968022 bp Ori: ADT96406.1 Feature: domain Description: PRK10358 Location: 4967561-4968020 bp Feature: domain Description: PRK1 0358 Location: 4967561 -4968020 bp Feature: gene Location: 4968177-4968515 bp Feature: gene Location: 4968564-4970036 bp Ori: ADT96408.1 Feature: domain Description: RVT_N Location: 4968612-4968855 bp Feature: domain Description: RVT_N Location: 496861 2-4968855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4968900-4969527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4968900-4969527 bp Feature: domain Description: GIIM Note: maturase Location: 4969587-4969812 bp Feature: domain Description: GIIM Note: maturase Location: 4969587-496981 2 bp Feature: gene Location: 4970138-4970401 bp Ori: ADT96409.1 Feature: domain Description: InsE Location: 4970153-4970402 bp Feature: domain Description: InsE Location: 49701 53-4970402 bp Feature: gene Location: 4970401-4971315 bp Ori: ADT96409.1 Feature: domain Description: PHA02517 Location: 4970500-4971292 bp Feature: domain Description: PHA0251 7 Location: 4970500-4971 292 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10636 (putative ABC transporter ATP-binding protein; Provisional), TIGR02443 (conserved hypothetical metal-binding protein), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK07478 (short chain dehydrogenase; Provisional), PRK10809 (30S ribosomal protein S5 alanine N-acetyltransferase), RarD (COG2962), Lrp (COG1522), AAA_15 (pfam13175)
TOPRIM_OLD (cd01026), TauE (pfam01925), GSDH (pfam07995), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), COG2932 (Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains ), RVT-UG5, nitrilase (cl11424), PRK12754 (transketolase; Reviewed), metK (TIGR01034)
CHAT (pfam12770), PRK10358 (tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL)