myRT

myRT report for GCA_000189495.1_ASM18949v1

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Seq: CP002478.1 Staphylococcus pseudintermedius ED99, complete genome (2572216 bp)
Overview 1 RT 1: 170230-176624 bp 2 RT 2: 664787-670210 bp 3 RT 3: 873502-879018 bp 4 RT 4: 1004088-1009781 bp 5 RT 5: 1455622-1462732 bp 6 RT 6: 1712835-1720284 bp 7 RT 7: 1925472-1931246 bp 8 RT 8: 2257257-2263475 bp 9 RT 9: 2450064-2456794 bp Neighborhood of RT #1 [170230, 176629] IscR PRK07251 RVT-GII GIIM Acetyltransf_2 YpbQ Neighborhood of RT #2 [664787, 670210] COG2865 RVT-GII GIIM nicotinamidase_related Neighborhood of RT #3 [873502, 879018] DUF1700 DUF4097 RVT-GII GIIM COG4927 Neighborhood of RT #4 [1004088, 1009789] CcmA EcsB RVT-GII GIIM HmoA hemE Neighborhood of RT #5 [1455622, 1462749] ABC_sbcCD SbcD RVT-GII GIIM CcdC PRK01844 Neighborhood of RT #6 [1712835, 1720289] PycA COG3860 RVT-GII GIIM FtsW YlaN Neighborhood of RT #7 [1925472, 1931254] HAD_Pase PRK13512 RVT-GII GIIM PRK13673 MhpD Neighborhood of RT #8 [2257257, 2263489] gpmA ABCF_EF-3 RVT-GII GIIM CcmA Neighborhood of RT #9 [2450064, 2456820] AraJ HmoA RVT-GII GIIM PenP MecR1 Transpeptidase Feature: gene Location: 170230-170652 bp Ori: ADX75501.1 Feature: domain Description: IscR Location: 170242-170554 bp Feature: domain Description: IscR Location: 1 70242-1 70554 bp Feature: gene Location: 170653-171978 bp Ori: ADX75502.1 Feature: domain Description: PRK07251 Location: 170656-171976 bp Feature: domain Description: PRK07251 Location: 1 70656-1 71 976 bp Feature: gene Location: 172531-173811 bp Ori: ADX75503.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172747-173356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 72747-1 73356 bp Feature: domain Description: GIIM Note: maturase Location: 173416-173647 bp Feature: domain Description: GIIM Note: maturase Location: 1 7341 6-1 73647 bp Feature: gene Location: 175035-175841 bp Ori: ADX75504.1 Feature: domain Description: Acetyltransf_2 Location: 175101-175794 bp Feature: domain Description: Acetyltransf_2 Location: 1 751 01 -1 75794 bp Feature: gene Location: 176135-176629 bp Ori: ADX75505.1 Feature: domain Description: YpbQ Location: 176141-176624 bp Feature: domain Description: YpbQ Location: 1 761 41 -1 76624 bp Feature: gene Location: 664787-666223 bp Ori: ADX75940.1 Feature: domain Description: COG2865 Location: 664808-666188 bp Feature: domain Description: COG2865 Location: 664808-6661 88 bp Feature: gene Location: 666472-666651 bp Feature: gene Location: 667462-668748 bp Ori: ADX75942.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 667678-668293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 667678-668293 bp Feature: domain Description: GIIM Note: maturase Location: 668353-668584 bp Feature: domain Description: GIIM Note: maturase Location: 668353-668584 bp Feature: gene Location: 669055-669600 bp Ori: ADX75943.1 Feature: domain Description: nicotinamidase_related Location: 669073-669535 bp Feature: domain Description: nicotinamidase_related Location: 669073-669535 bp Feature: gene Location: 669761-670210 bp Feature: gene Location: 873502-874065 bp Ori: ADX76130.1 Feature: domain Description: DUF1700 Location: 873508-874045 bp Feature: domain Description: DUF1 700 Location: 873508-874045 bp Feature: gene Location: 874062-874904 bp Ori: ADX76131.1 Feature: domain Description: DUF4097 Location: 874197-874899 bp Feature: domain Description: DUF4097 Location: 8741 97-874899 bp Feature: gene Location: 875462-876748 bp Ori: ADX76132.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 875678-876293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 875678-876293 bp Feature: domain Description: GIIM Note: maturase Location: 876353-876584 bp Feature: domain Description: GIIM Note: maturase Location: 876353-876584 bp Feature: gene Location: 876873-877916 bp Ori: ADX76133.1 Feature: domain Description: COG4927 Location: 876876-877908 bp Feature: domain Description: COG4927 Location: 876876-877908 bp Feature: gene Location: 878629-879018 bp Feature: gene Location: 1004088-1004825 bp Ori: ADX76252.1 Feature: domain Description: CcmA Location: 1004094-1004766 bp Feature: domain Description: CcmA Location: 1 004094-1 004766 bp Feature: gene Location: 1004822-1006036 bp Ori: ADX76253.1 Feature: domain Description: EcsB Location: 1004840-1005971 bp Feature: domain Description: EcsB Location: 1 004840-1 005971 bp Feature: gene Location: 1006578-1007864 bp Ori: ADX76254.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1006794-1007409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 006794-1 007409 bp Feature: domain Description: GIIM Note: maturase Location: 1007469-1007700 bp Feature: domain Description: GIIM Note: maturase Location: 1 007469-1 007700 bp Feature: gene Location: 1007932-1008444 bp Ori: ADX76255.1 Gene: traP Feature: domain Description: HmoA Location: 1008148-1008367 bp Feature: domain Description: HmoA Location: 1 0081 48-1 008367 bp Feature: gene Location: 1008755-1009789 bp Ori: ADX76256.1 Gene: hemE Feature: domain Description: hemE Location: 1008767-1009781 bp Feature: domain Description: hemE Location: 1 008767-1 009781 bp Feature: gene Location: 1455622-1458654 bp Ori: ADX76685.1 Gene: sbcC Feature: domain Description: ABC_sbcCD Location: 1455625-1458628 bp Feature: domain Description: ABC_sbcCD Location: 1 455625-1 458628 bp Feature: gene Location: 1458657-1459778 bp Ori: ADX76686.1 Gene: sbcD Feature: domain Description: SbcD Location: 1458663-1459767 bp Feature: domain Description: SbcD Location: 1 458663-1 459767 bp Feature: gene Location: 1459964-1461250 bp Ori: ADX76687.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1460180-1460795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4601 80-1 460795 bp Feature: domain Description: GIIM Note: maturase Location: 1460855-1461086 bp Feature: domain Description: GIIM Note: maturase Location: 1 460855-1 461 086 bp Feature: gene Location: 1461807-1462274 bp Ori: ADX76688.1 Feature: domain Description: CcdC Location: 1461813-1462266 bp Feature: domain Description: CcdC Location: 1 461 81 3-1 462266 bp Feature: gene Location: 1462522-1462749 bp Ori: ADX76689.1 Feature: domain Description: PRK01844 Location: 1462525-1462732 bp Feature: domain Description: PRK01 844 Location: 1 462525-1 462732 bp Feature: gene Location: 1712835-1716284 bp Ori: ADX76930.1 Gene: pyc Feature: domain Description: PycA Location: 1712841-1716273 bp Feature: domain Description: PycA Location: 1 71 2841 -1 71 6273 bp Feature: gene Location: 1716483-1716665 bp Ori: ADX76931.1 Feature: domain Description: COG3860 Location: 1716498-1716618 bp Feature: domain Description: COG3860 Location: 1 71 6498-1 71 661 8 bp Feature: gene Location: 1716834-1718120 bp Ori: ADX76932.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1717050-1717665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 7050-1 71 7665 bp Feature: domain Description: GIIM Note: maturase Location: 1717725-1717956 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 7725-1 71 7956 bp Feature: gene Location: 1718711-1719943 bp Ori: ADX76933.1 Feature: domain Description: FtsW Location: 1718750-1719890 bp Feature: domain Description: FtsW Location: 1 71 8750-1 71 9890 bp Feature: gene Location: 1720014-1720289 bp Ori: ADX76934.1 Feature: domain Description: YlaN Location: 1720020-1720284 bp Feature: domain Description: YlaN Location: 1 720020-1 720284 bp Feature: gene Location: 1925472-1926296 bp Ori: ADX77114.1 Feature: domain Description: HAD_Pase Location: 1925487-1926261 bp Feature: domain Description: HAD_Pase Location: 1 925487-1 926261 bp Feature: gene Location: 1926327-1927652 bp Ori: ADX77115.1 Gene: cdr Feature: domain Description: PRK13512 Location: 1926336-1927644 bp Feature: domain Description: PRK1 351 2 Location: 1 926336-1 927644 bp Feature: gene Location: 1927731-1929017 bp Ori: ADX77116.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1927947-1928562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 927947-1 928562 bp Feature: domain Description: GIIM Note: maturase Location: 1928622-1928853 bp Feature: domain Description: GIIM Note: maturase Location: 1 928622-1 928853 bp Feature: gene Location: 1929624-1930013 bp Ori: ADX77117.1 Feature: domain Description: PRK13673 Location: 1929636-1929990 bp Feature: domain Description: PRK1 3673 Location: 1 929636-1 929990 bp Feature: gene Location: 1930349-1931254 bp Ori: ADX77118.1 Feature: domain Description: MhpD Location: 1930499-1931246 bp Feature: domain Description: MhpD Location: 1 930499-1 931 246 bp Feature: gene Location: 2257257-2257943 bp Ori: ADX77435.1 Feature: domain Description: gpmA Location: 2257260-2257941 bp Feature: domain Description: gpmA Location: 2257260-2257941 bp Feature: gene Location: 2258561-2259013 bp Ori: ADX77436.1 Feature: domain Description: ABCF_EF-3 Location: 2258675-2258999 bp Feature: domain Description: ABCF_EF-3 Location: 2258675-2258999 bp Feature: gene Location: 2260197-2261540 bp Ori: ADX77437.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2260413-2261028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226041 3-2261 028 bp Feature: domain Description: GIIM Note: maturase Location: 2261088-2261319 bp Feature: domain Description: GIIM Note: maturase Location: 2261 088-2261 31 9 bp Feature: gene Location: 2262117-2262839 bp Feature: gene Location: 2262854-2263489 bp Ori: ADX77439.1 Feature: domain Description: CcmA Location: 2262869-2263475 bp Feature: domain Description: CcmA Location: 2262869-2263475 bp Feature: gene Location: 2450064-2451236 bp Ori: ADX77597.1 Feature: domain Description: AraJ Location: 2450070-2451210 bp Feature: domain Description: AraJ Location: 2450070-2451 21 0 bp Feature: gene Location: 2451480-2451908 bp Ori: ADX77598.1 Feature: domain Description: HmoA Location: 2451612-2451834 bp Feature: domain Description: HmoA Location: 2451 61 2-2451 834 bp Feature: gene Location: 2452060-2453346 bp Ori: ADX77599.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2452276-2452891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2452276-2452891 bp Feature: domain Description: GIIM Note: maturase Location: 2452951-2453182 bp Feature: domain Description: GIIM Note: maturase Location: 2452951 -24531 82 bp Feature: gene Location: 2454111-2454956 bp Ori: ADX77600.1 Gene: blaZ-2 Feature: domain Description: PenP Location: 2454123-2454948 bp Feature: domain Description: PenP Location: 24541 23-2454948 bp Feature: gene Location: 2455063-2456820 bp Ori: ADX77601.1 Gene: blaR1-2 Feature: domain Description: MecR1 Location: 2455066-2456089 bp Feature: domain Description: MecR1 Location: 2455066-2456089 bp Feature: domain Description: Transpeptidase Location: 2456149-2456794 bp Feature: domain Description: Transpeptidase Location: 24561 49-2456794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IscR (TIGR02010), PRK07251 (FAD-containing oxidoreductase), RVT-GII, GIIM (pfam08388), Acetyltransf_2 (pfam00797), YpbQ (COG1755), COG2865 (Predicted transcriptional regulator, contains HTH domain ), nicotinamidase_related (cd01014), DUF1700 (pfam08006), DUF4097 (pfam13349)
COG4927 (Predicted choloylglycine hydrolase ), CcmA (COG4133), EcsB (pfam05975), HmoA (COG2329), hemE (TIGR01464), ABC_sbcCD (cd03279), SbcD (COG0420), CcdC (COG4846), PRK01844 (YneF family protein), PycA (COG1038)
COG3860 (Uncharacterized protein, DUF2087 family ), FtsW (COG0772), YlaN (COG4838), HAD_Pase (cd16418), PRK13512 (coenzyme A disulfide reductase; Provisional), PRK13673 (hypothetical protein; Provisional), MhpD (COG3971), gpmA (PRK14120), ABCF_EF-3 (cd03221), AraJ (COG2814)
PenP (COG2367), MecR1 (COG4219), Transpeptidase (pfam00905)