myRT

myRT report for GCA_000193355.1_ASM19335v1

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Seq: CP001913.1 Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT72, complete sequence (72074 bp)
Overview 1 RT 1: 7974-15532 bp Neighborhood of RT #1 [7974, 15532] MobL VirD4 RVT-GII HNHc T4SS-DNA_transf Feature: gene Location: 7974-10517 bp Ori: AEA19703.1 Feature: domain Description: MobL Location: 8022-8991 bp Feature: domain Description: MobL Location: 8022-8991 bp Feature: gene Location: 10544-11098 bp Ori: AEA19704.1 Feature: domain Description: VirD4 Location: 10595-11087 bp Feature: domain Description: VirD4 Location: 1 0595-1 1 087 bp Feature: gene Location: 11814-13646 bp Ori: AEA19705.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12114-12819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 21 1 4-1 281 9 bp Feature: domain Description: HNHc Note: nucleases Location: 13398-13530 bp Feature: domain Description: HNHc Note: nucleases Location: 1 3398-1 3530 bp Feature: gene Location: 13787-15139 bp Ori: AEA19706.1 Feature: domain Description: T4SS-DNA_transf Location: 13793-14864 bp Feature: domain Description: T4SS-DNA_transf Location: 1 3793-1 4864 bp Feature: gene Location: 15152-15532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MobL (pfam18555), VirD4 (COG3505), RVT-GII, HNHc (smart00507), T4SS-DNA_transf (pfam02534)

Seq: CP001907.1 Bacillus thuringiensis serovar chinensis CT-43, complete genome (5486830 bp)
Overview 1 RT 1: 650720-656679 bp 2 RT 2: 1032282-1037576 bp 3 RT 3: 3958478-3964051 bp Neighborhood of RT #1 [650720, 656687] HisM HisM RVT-GII HNHc PRK11387 YhfA Neighborhood of RT #2 [1032282, 1037656] RVT-GII HNHc ETR_like Ntn_PVA Neighborhood of RT #3 [3958478, 3964107] PHA02517 amiF RVT-GII HNHc amiF caa3_CtaG Feature: gene Location: 650720-651376 bp Ori: AEA14253.1 Feature: domain Description: HisM Location: 650741-651365 bp Feature: domain Description: HisM Location: 650741-651365 bp Feature: gene Location: 651377-652042 bp Ori: AEA14254.1 Feature: domain Description: HisM Location: 651410-651923 bp Feature: domain Description: HisM Location: 651410-65192 3 bp Feature: gene Location: 652019-653815 bp Ori: AEA14255.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 652277-652982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 652 2 77-652 982 bp Feature: domain Description: HNHc Note: nucleases Location: 653543-653678 bp Feature: domain Description: HNHc Note: nucleases Location: 653543-653678 bp Feature: gene Location: 654905-656335 bp Ori: AEA14256.1 Feature: domain Description: PRK11387 Location: 654917-656279 bp Feature: domain Description: PRK11387 Location: 654917-6562 79 bp Feature: gene Location: 656310-656687 bp Ori: AEA14257.1 Feature: domain Description: YhfA Location: 656373-656679 bp Feature: domain Description: YhfA Location: 656373-656679 bp Feature: gene Location: 1032282-1032428 bp Feature: gene Location: 1032525-1032830 bp Feature: gene Location: 1033058-1034863 bp Ori: AEA14641.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1033352-1034048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1033352 -1034048 bp Feature: domain Description: HNHc Note: nucleases Location: 1034609-1034747 bp Feature: domain Description: HNHc Note: nucleases Location: 1034609-1034747 bp Feature: gene Location: 1035537-1036520 bp Ori: AEA14642.1 Feature: domain Description: ETR_like Location: 1035558-1036494 bp Feature: domain Description: ETR_like Location: 1035558-1036494 bp Feature: gene Location: 1036670-1037656 bp Ori: AEA14643.1 Feature: domain Description: Ntn_PVA Location: 1036676-1037576 bp Feature: domain Description: Ntn_PVA Location: 1036676-1037576 bp Feature: gene Location: 3958478-3959224 bp Ori: AEA17604.1 Feature: domain Description: PHA02517 Location: 3958487-3959213 bp Feature: domain Description: PHA02 517 Location: 3958487-39592 13 bp Feature: gene Location: 3959290-3959913 bp Ori: AEA17605.1 Gene: amiF Feature: domain Description: amiF Location: 3959293-3959908 bp Feature: domain Description: amiF Location: 39592 93-3959908 bp Feature: gene Location: 3960030-3961862 bp Ori: AEA17606.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3960330-3961035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3960330-3961035 bp Feature: domain Description: HNHc Note: nucleases Location: 3961614-3961746 bp Feature: domain Description: HNHc Note: nucleases Location: 3961614-3961746 bp Feature: gene Location: 3962578-3962967 bp Ori: AEA17607.1 Gene: amiF Feature: domain Description: amiF Location: 3962581-3962953 bp Feature: domain Description: amiF Location: 3962 581-3962 953 bp Feature: gene Location: 3963202-3964107 bp Ori: AEA17608.1 Feature: domain Description: caa3_CtaG Location: 3963211-3964051 bp Feature: domain Description: caa3_CtaG Location: 39632 11-3964051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HisM (COG0765), RVT-GII, HNHc (smart00507), PRK11387 (S-methylmethionine permease), YhfA (COG1765), ETR_like (cd05282), Ntn_PVA (cd00542), PHA02517 (putative transposase OrfB; Reviewed), amiF (PRK13287), caa3_CtaG (TIGR02737)

Seq: CP001908.1 Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT127, complete sequence (127885 bp)
Overview 1 RT 1: 16203-24764 bp 2 RT 2: 62008-67603 bp 3 RT 3: 79890-85054 bp Neighborhood of RT #1 [16203, 24865] COG4644 DDE_Tnp_Tn3 RVT-GII GIIM DDE_Tnp_1 DDE_Tnp_1 Neighborhood of RT #2 [62008, 67614] Glucosaminidase Spr TraC-F-type RVT-GII HNHc VirB4_CagE Neighborhood of RT #3 [79890, 85054] VirD4 RVT-GII HNHc T4SS-DNA_transf Feature: gene Location: 16203-19166 bp Ori: AEA19198.1 Feature: domain Description: COG4644 Location: 16299-17127 bp Feature: domain Description: COG4644 Location: 16299-17127 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 17934-19092 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1793 4-19092 bp Feature: gene Location: 19670-19930 bp Feature: gene Location: 20206-21537 bp Ori: AEA19200.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20515-21154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20515-21154 bp Feature: domain Description: GIIM Note: maturase Location: 21229-21454 bp Feature: domain Description: GIIM Note: maturase Location: 21229-21454 bp Feature: gene Location: 22018-23106 bp Ori: AEA19201.1 Feature: domain Description: DDE_Tnp_1 Location: 22405-23092 bp Feature: domain Description: DDE_Tnp_1 Location: 22405-23 092 bp Feature: gene Location: 23642-24865 bp Ori: AEA19202.1 Feature: domain Description: DDE_Tnp_1 Location: 24008-24764 bp Feature: domain Description: DDE_Tnp_1 Location: 24008-24764 bp Feature: gene Location: 62008-63045 bp Ori: AEA19238.1 Feature: domain Description: Glucosaminidase Location: 62260-62500 bp Feature: domain Description: Glucosaminidase Location: 62260-62500 bp Feature: domain Description: Spr Location: 62680-63025 bp Feature: domain Description: Spr Location: 62680-63 025 bp Feature: gene Location: 63061-63882 bp Ori: AEA19239.1 Feature: domain Description: TraC-F-type Location: 63178-63733 bp Feature: domain Description: TraC-F-type Location: 63 178-63 73 3 bp Feature: gene Location: 64182-66104 bp Ori: AEA19240.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64572-65277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64572-65277 bp Feature: domain Description: HNHc Note: nucleases Location: 65856-65988 bp Feature: domain Description: HNHc Note: nucleases Location: 65856-65988 bp Feature: gene Location: 66407-66529 bp Feature: gene Location: 66730-67614 bp Ori: AEA19242.1 Feature: domain Description: VirB4_CagE Location: 66913-67603 bp Feature: domain Description: VirB4_CagE Location: 66913 -67603 bp Feature: gene Location: 79890-80483 bp Ori: AEA19257.1 Feature: domain Description: VirD4 Location: 80055-80472 bp Feature: domain Description: VirD4 Location: 80055-80472 bp Feature: gene Location: 80684-80806 bp Feature: gene Location: 81109-83031 bp Ori: AEA19259.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81499-82204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81499-82204 bp Feature: domain Description: HNHc Note: nucleases Location: 82783-82915 bp Feature: domain Description: HNHc Note: nucleases Location: 82783 -82915 bp Feature: gene Location: 83148-84830 bp Ori: AEA19260.1 Feature: domain Description: T4SS-DNA_transf Location: 83151-84237 bp Feature: domain Description: T4SS-DNA_transf Location: 83 151-8423 7 bp Feature: gene Location: 84932-85054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4644 (Transposase and inactivated derivatives, TnpA family ), DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), Glucosaminidase (pfam01832), Spr (COG0791), TraC-F-type (TIGR02746), HNHc (smart00507), VirB4_CagE (TIGR00929)
VirD4 (COG3505), T4SS-DNA_transf (pfam02534)

Seq: CP001910.1 Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence (281231 bp)
Overview 1 RT 1: 77306-97682 bp 2 RT 2: 100601-106381 bp 3 RT 3: 135083-145078 bp 4 RT 4: 187246-194474 bp Neighborhood of RT #1 [77306, 97682] NlpD Spr RVT-GII Intron_maturas2 HNHc CwlT_like RVT-GII HNHc CwlT_like RVT-GII HNHc TrbL TraC-F-type RVT-GII HNHc TraC-F-type Neighborhood of RT #2 [100601, 106381] DUF3854 LPD1 RVT-GII HNHc Neighborhood of RT #3 [135083, 145078] PRK09183 COG4584 RVT-GII Intron_maturas2 HNHc RVT-GII GIIM HNHc Ftsk_gamma Neighborhood of RT #4 [187246, 194474] RVT-GII GIIM KOG1000 KOG1000 Feature: gene Location: 77306-77881 bp Feature: gene Location: 77898-78773 bp Ori: AEA19434.1 Feature: domain Description: NlpD Location: 77913-78342 bp Feature: domain Description: NlpD Location: 77913-7834 2 bp Feature: domain Description: Spr Location: 78378-78714 bp Feature: domain Description: Spr Location: 78378-78714 bp Feature: gene Location: 78933-80756 bp Ori: AEA19435.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79197-80031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79197-80031 bp Feature: domain Description: Intron_maturas2 Location: 80100-80439 bp Feature: domain Description: Intron_maturas2 Location: 80100-804 39 bp Feature: domain Description: HNHc Note: nucleases Location: 80577-80733 bp Feature: domain Description: HNHc Note: nucleases Location: 80577-80733 bp Feature: gene Location: 81332-81523 bp Ori: AEA19436.1 Feature: domain Description: CwlT_like Location: 81359-81515 bp Feature: domain Description: CwlT_like Location: 81359-81515 bp Feature: gene Location: 81592-83388 bp Ori: AEA19437.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81850-82555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81850-82555 bp Feature: domain Description: HNHc Note: nucleases Location: 83116-83251 bp Feature: domain Description: HNHc Note: nucleases Location: 83116-83251 bp Feature: gene Location: 84161-84328 bp Ori: AEA19438.1 Feature: domain Description: CwlT_like Location: 84203-84311 bp Feature: domain Description: CwlT_like Location: 84 203-84 311 bp Feature: gene Location: 84444-86249 bp Ori: AEA19439.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84738-85434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 738-854 34 bp Feature: domain Description: HNHc Note: nucleases Location: 85995-86133 bp Feature: domain Description: HNHc Note: nucleases Location: 85995-86133 bp Feature: gene Location: 87914-91933 bp Ori: AEA19440.1 Feature: domain Description: TrbL Location: 88193-88691 bp Feature: domain Description: TrbL Location: 88193-88691 bp Feature: gene Location: 91964-92932 bp Ori: AEA19441.1 Feature: domain Description: TraC-F-type Location: 91991-92771 bp Feature: domain Description: TraC-F-type Location: 91991-92771 bp Feature: gene Location: 93224-95056 bp Ori: AEA19442.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93524-94229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93524 -94 229 bp Feature: domain Description: HNHc Note: nucleases Location: 94808-94940 bp Feature: domain Description: HNHc Note: nucleases Location: 94 808-94 94 0 bp Feature: gene Location: 95785-96765 bp Ori: AEA19443.1 Feature: domain Description: TraC-F-type Location: 96214-96688 bp Feature: domain Description: TraC-F-type Location: 96214 -96688 bp Feature: gene Location: 96768-97682 bp Feature: gene Location: 100601-101914 bp Ori: AEA19452.1 Feature: domain Description: DUF3854 Location: 101546-101885 bp Feature: domain Description: DUF3854 Location: 10154 6-101885 bp Feature: gene Location: 101904-102701 bp Ori: AEA19453.1 Feature: domain Description: LPD1 Location: 102450-102645 bp Feature: domain Description: LPD1 Location: 1024 50-10264 5 bp Feature: gene Location: 102773-104569 bp Ori: AEA19454.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103067-103763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103067-103763 bp Feature: domain Description: HNHc Note: nucleases Location: 104363-104438 bp Feature: domain Description: HNHc Note: nucleases Location: 104 363-104 4 38 bp Feature: gene Location: 104601-104699 bp Feature: gene Location: 105290-106381 bp Feature: gene Location: 135083-135835 bp Ori: AEA19486.1 Feature: domain Description: PRK09183 Location: 135089-135815 bp Feature: domain Description: PRK09183 Location: 135089-135815 bp Feature: gene Location: 135825-137120 bp Ori: AEA19487.1 Feature: domain Description: COG4584 Location: 136239-136629 bp Feature: domain Description: COG4 584 Location: 136239-136629 bp Feature: gene Location: 137496-138806 bp Ori: AEA19488.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137499-138081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1374 99-138081 bp Feature: domain Description: Intron_maturas2 Location: 138153-138471 bp Feature: domain Description: Intron_maturas2 Location: 138153-1384 71 bp Feature: domain Description: HNHc Note: nucleases Location: 138621-138777 bp Feature: domain Description: HNHc Note: nucleases Location: 138621-138777 bp Feature: gene Location: 138945-139466 bp Feature: gene Location: 140139-142013 bp Ori: AEA19490.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140439-141144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 04 39-14 114 4 bp Feature: domain Description: GIIM Note: maturase Location: 141258-141426 bp Feature: domain Description: GIIM Note: maturase Location: 14 1258-14 14 26 bp Feature: domain Description: HNHc Note: nucleases Location: 141774-141939 bp Feature: domain Description: HNHc Note: nucleases Location: 14 1774 -14 1939 bp Feature: gene Location: 142354-144036 bp Ori: AEA19491.1 Feature: domain Description: Ftsk_gamma Location: 142981-143161 bp Feature: domain Description: Ftsk_gamma Location: 14 2981-14 3161 bp Feature: gene Location: 144308-145078 bp Feature: gene Location: 187246-187473 bp Feature: gene Location: 187545-188453 bp Feature: gene Location: 189200-191065 bp Ori: AEA19538.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189500-190205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 189500-190205 bp Feature: domain Description: GIIM Note: maturase Location: 190292-190475 bp Feature: domain Description: GIIM Note: maturase Location: 190292-1904 75 bp Feature: gene Location: 191343-193709 bp Ori: AEA19539.1 Feature: domain Description: KOG1000 Location: 192051-192267 bp Feature: domain Description: KOG1000 Location: 192051-192267 bp Feature: domain Description: KOG1000 Location: 192870-193203 bp Feature: domain Description: KOG1000 Location: 192870-193203 bp Feature: gene Location: 193761-194474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), CwlT_like, TrbL (pfam04610), TraC-F-type (TIGR02746), DUF3854 (pfam12965), LPD1 (pfam18796)
PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase ), GIIM (pfam08388), Ftsk_gamma (smart00843), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily )

Seq: CP001915.1 Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT83, complete sequence (83590 bp)
Overview 1 RT 1: 67829-73968 bp Neighborhood of RT #1 [67829, 74171] AAA_10 RVT-GII HNHc AAA_10 TcpE Feature: gene Location: 67829-68338 bp Feature: gene Location: 68397-69353 bp Ori: AEA19871.1 Feature: domain Description: AAA_10 Location: 68418-69306 bp Feature: domain Description: AAA_10 Location: 68418-69306 bp Feature: gene Location: 69492-71324 bp Ori: AEA19872.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69792-70497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69792-70497 bp Feature: domain Description: HNHc Note: nucleases Location: 71076-71208 bp Feature: domain Description: HNHc Note: nucleases Location: 71076-71208 bp Feature: gene Location: 72053-73660 bp Ori: AEA19873.1 Feature: domain Description: AAA_10 Location: 73463-73643 bp Feature: domain Description: AAA_10 Location: 73463-73643 bp Feature: gene Location: 73620-74171 bp Ori: AEA19874.1 Feature: domain Description: TcpE Location: 73692-73968 bp Feature: domain Description: TcpE Location: 73692-73968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII, HNHc (smart00507), TcpE (pfam12648)