myRT

myRT report for GCA_000194605.1_ASM19460v1

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Seq: CP002542.1 Fluviicola taffensis DSM 16823, complete genome (4633577 bp)
Overview 1 RT 1: 510848-520901 bp 2 RT 2: 1150567-1156154 bp 3 RT 3: 2464056-2471184 bp 4 RT 4: 3216893-3224865 bp Neighborhood of RT #1 [510848, 520906] HTH_3 SIR2 Piwi_piwi-like_ProArk RVT-UG14 CusA OEP OEP Neighborhood of RT #2 [1150567, 1156159] RVT-UG14 PRK11478 Neighborhood of RT #3 [2464056, 2471327] DUF4238 group_II_RT_mat RVT-UG6 dnaG HEPN_Apea Neighborhood of RT #4 [3216893, 3224927] PRK11331 PRK11331 PRK11331 YafY RVT-UG2 RMtype1_S_Aco12261I-TRD2-CR2 RMtype1_S_Aco12261I-TRD2-CR2 HsdM Feature: gene Location: 510848-511075 bp Ori: AEA42454.1 Feature: domain Description: HTH_3 Location: 510896-511058 bp Feature: domain Description: HTH_3 Location: 51 0896-51 1 058 bp Feature: gene Location: 511265-514423 bp Ori: AEA42455.1 Feature: domain Description: SIR2 Location: 511343-511937 bp Feature: domain Description: SIR2 Location: 51 1 343-51 1 937 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 513074-514379 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 51 3074-51 4379 bp Feature: gene Location: 514444-515982 bp Ori: AEA42456.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 514870-515359 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 51 4870-51 5359 bp Feature: gene Location: 516024-516455 bp Feature: gene Location: 516548-520906 bp Ori: AEA42458.1 Feature: domain Description: CusA Location: 516551-519659 bp Feature: domain Description: CusA Location: 51 6551 -51 9659 bp Feature: domain Description: OEP Location: 519755-520274 bp Feature: domain Description: OEP Location: 51 9755-520274 bp Feature: domain Description: OEP Location: 520346-520901 bp Feature: domain Description: OEP Location: 520346-520901 bp Feature: gene Location: 1150567-1151151 bp Feature: gene Location: 1151753-1152193 bp Feature: gene Location: 1152210-1153760 bp Ori: AEA43024.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 1152639-1153128 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 1 1 52639-1 1 531 28 bp Feature: gene Location: 1154444-1155739 bp Feature: gene Location: 1155776-1156159 bp Ori: AEA43026.1 Feature: domain Description: PRK11478 Location: 1155782-1156154 bp Feature: domain Description: PRK1 1 478 Location: 1 1 55782-1 1 561 54 bp Feature: gene Location: 2464056-2465123 bp Ori: AEA44124.1 Feature: domain Description: DUF4238 Location: 2464074-2464848 bp Feature: domain Description: DUF4238 Location: 2464074-2464848 bp Feature: gene Location: 2465286-2466134 bp Feature: gene Location: 2466138-2469362 bp Ori: AEA44126.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 2466186-2466495 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 24661 86-2466495 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 2466792-2467221 bp Feature: RT Description: RVT-UG6 Note: UG6 RT Location: 2466792-2467221 bp Feature: gene Location: 2469325-2470332 bp Ori: AEA44127.1 Feature: domain Description: dnaG Location: 2469379-2470324 bp Feature: domain Description: dnaG Location: 2469379-2470324 bp Feature: gene Location: 2470470-2471327 bp Ori: AEA44128.1 Feature: domain Description: HEPN_Apea Location: 2470914-2471184 bp Feature: domain Description: HEPN_Apea Location: 247091 4-2471 1 84 bp Feature: gene Location: 3216893-3219055 bp Ori: AEA44774.1 Feature: domain Description: PRK11331 Location: 3217535-3217652 bp Feature: domain Description: PRK1 1 331 Location: 321 7535-321 7652 bp Feature: domain Description: PRK11331 Location: 3217895-3218006 bp Feature: domain Description: PRK1 1 331 Location: 321 7895-321 8006 bp Feature: domain Description: PRK11331 Location: 3218423-3219017 bp Feature: domain Description: PRK1 1 331 Location: 321 8423-321 901 7 bp Feature: gene Location: 3219076-3220257 bp Ori: AEA44775.1 Feature: domain Description: YafY Location: 3220123-3220219 bp Feature: domain Description: YafY Location: 32201 23-322021 9 bp Feature: gene Location: 3220618-3222174 bp Ori: AEA44776.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3220861-3221773 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3220861 -3221 773 bp Feature: gene Location: 3222185-3223378 bp Ori: AEA44777.1 Feature: domain Description: RMtype1_S_Aco12261I-TRD2-CR2 Location: 3222476-3222734 bp Feature: domain Description: RMtype1 _S_Aco1 2261 I-TRD2-CR2 Location: 3222476-3222734 bp Feature: domain Description: RMtype1_S_Aco12261I-TRD2-CR2 Location: 3222839-3223343 bp Feature: domain Description: RMtype1 _S_Aco1 2261 I-TRD2-CR2 Location: 3222839-3223343 bp Feature: gene Location: 3223362-3224927 bp Ori: AEA44778.1 Feature: domain Description: HsdM Location: 3223383-3224865 bp Feature: domain Description: HsdM Location: 3223383-3224865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), SIR2 (pfam02146), Piwi_piwi-like_ProArk (cd04659), RVT-UG14, CusA (COG3696), OEP (pfam02321), PRK11478 (VOC family protein), DUF4238 (pfam14022), group_II_RT_mat (TIGR04416), RVT-UG6
dnaG (TIGR01391), HEPN_Apea (pfam18739), PRK11331 (5-methylcytosine-specific restriction enzyme subunit McrB; Provisional), YafY (COG2378), RVT-UG2, RMtype1_S_Aco12261I-TRD2-CR2 (cd17262), HsdM (COG0286)