myRT

myRT report for GCA_000195895.1_ASM19589v1

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Seq: CP000099.1 Methanosarcina barkeri str. Fusaro, complete genome (4837408 bp)
Overview 1 RT 1: 1664561-1667880 bp 2 RT 2: 2120171-2127979 bp Neighborhood of RT #1 [1664561, 1668428] PRiA4_ORF3 RVT-CRISPR Cas6b_N Cas6b_C Cmr1_III-B Neighborhood of RT #2 [2120171, 2127999] GT4_PimA-like AglD2 RVT_N RVT-GII GIIM Cupredoxin_Fibrocystin-L_like Cupredoxin_Fibrocystin-L_like COG4742 Feature: gene Location: 1664561-1664761 bp Feature: gene Location: 1664962-1665528 bp Ori: AAZ70311.1 Feature: domain Description: PRiA4_ORF3 Location: 1664983-1665511 bp Feature: domain Description: PRiA4_ORF3 Location: 1 664983-1 66551 1 bp Feature: gene Location: 1665910-1666437 bp Ori: AAZ70312.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1665943-1666147 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 665943-1 6661 47 bp Feature: gene Location: 1666575-1667273 bp Ori: AAZ70313.1 Feature: domain Description: Cas6b_N Location: 1666596-1666896 bp Feature: domain Description: Cas6b_N Location: 1 666596-1 666896 bp Feature: domain Description: Cas6b_C Location: 1666908-1667241 bp Feature: domain Description: Cas6b_C Location: 1 666908-1 667241 bp Feature: gene Location: 1667328-1668428 bp Ori: AAZ70314.1 Feature: domain Description: Cmr1_III-B Location: 1667343-1667880 bp Feature: domain Description: Cmr1 _III-B Location: 1 667343-1 667880 bp Feature: gene Location: 2120171-2121301 bp Ori: AAZ70673.1 Feature: domain Description: GT4_PimA-like Location: 2120186-2121263 bp Feature: domain Description: GT4_PimA-like Location: 21 201 86-21 21 263 bp Feature: gene Location: 2121277-2122122 bp Ori: AAZ70674.1 Feature: domain Description: AglD2 Location: 2121286-2122114 bp Feature: domain Description: AglD2 Location: 21 21 286-21 221 1 4 bp Feature: gene Location: 2123192-2124670 bp Ori: AAZ70675.1 Feature: domain Description: RVT_N Location: 2123282-2123525 bp Feature: domain Description: RVT_N Location: 21 23282-21 23525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2123570-2124206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 23570-21 24206 bp Feature: domain Description: GIIM Note: maturase Location: 2124257-2124491 bp Feature: domain Description: GIIM Note: maturase Location: 21 24257-21 24491 bp Feature: gene Location: 2125949-2126779 bp Ori: AAZ70676.1 Feature: domain Description: Cupredoxin_Fibrocystin-L_like Location: 2126156-2126390 bp Feature: domain Description: Cupredoxin_Fibrocystin-L_like Location: 21 261 56-21 26390 bp Feature: domain Description: Cupredoxin_Fibrocystin-L_like Location: 2126531-2126774 bp Feature: domain Description: Cupredoxin_Fibrocystin-L_like Location: 21 26531 -21 26774 bp Feature: gene Location: 2127106-2127999 bp Ori: AAZ70677.1 Feature: domain Description: COG4742 Location: 2127142-2127979 bp Feature: domain Description: COG4742 Location: 21 271 42-21 27979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRiA4_ORF3 (pfam07929), RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, Cmr1_III-B (cd09657), GT4_PimA-like (cd03801), AglD2 (COG0392), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)
Cupredoxin_Fibrocystin-L_like (cd04217), COG4742 (Predicted transcriptional regulator, contains HTH domain )