myRT

myRT report for GCA_000196015.1_ASM19601v1

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Seq: CP000352.1 Cupriavidus metallidurans CH34, complete genome (3928089 bp)
Overview 1 RT 1: 268724-274244 bp 2 RT 2: 1590502-1594870 bp 3 RT 3: 3132458-3141455 bp Neighborhood of RT #1 [268724, 274261] PspE GRX_bact RVT_N RVT-GII GIIM HNHc PRK05751 gpsA Neighborhood of RT #2 [1590502, 1594870] KAP_NTPase RVT-Retrons HTH_XRE Neighborhood of RT #3 [3132458, 3141487] BaeS PRK15347 RVT_N RVT-GII GIIM HNHc PRK05627 ileS Feature: gene Location: 268724-269137 bp Ori: ADC45026.1 Feature: domain Description: PspE Location: 268838-269132 bp Feature: domain Description: PspE Location: 268838-2691 32 bp Feature: gene Location: 269216-269473 bp Ori: ABF07138.1 Gene: grxC Feature: domain Description: GRX_bact Location: 269228-269465 bp Feature: domain Description: GRX_bact Location: 269228-269465 bp Feature: gene Location: 270722-272437 bp Ori: ABF07139.1 Feature: domain Description: RVT_N Location: 270779-271022 bp Feature: domain Description: RVT_N Location: 270779-271 022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271067-271715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 067-271 71 5 bp Feature: domain Description: GIIM Note: maturase Location: 271769-272000 bp Feature: domain Description: GIIM Note: maturase Location: 271 769-272000 bp Feature: domain Description: HNHc Note: nucleases Location: 272219-272384 bp Feature: domain Description: HNHc Note: nucleases Location: 27221 9-272384 bp Feature: gene Location: 272596-273114 bp Ori: ABF07140.1 Gene: secB Feature: domain Description: PRK05751 Location: 272605-273058 bp Feature: domain Description: PRK05751 Location: 272605-273058 bp Feature: gene Location: 273233-274261 bp Ori: ABF07141.1 Gene: gpsA Feature: domain Description: gpsA Location: 273236-274244 bp Feature: domain Description: gpsA Location: 273236-274244 bp Feature: gene Location: 1590502-1591383 bp Feature: gene Location: 1591383-1593317 bp Ori: ABF08355.1 Feature: domain Description: KAP_NTPase Location: 1591437-1592526 bp Feature: domain Description: KAP_NTPase Location: 1 591 437-1 592526 bp Feature: gene Location: 1593336-1594307 bp Ori: ABF08356.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1593486-1594050 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 593486-1 594050 bp Feature: gene Location: 1594273-1594578 bp Ori: ADC45065.1 Feature: domain Description: HTH_XRE Location: 1594285-1594447 bp Feature: domain Description: HTH_XRE Location: 1 594285-1 594447 bp Feature: gene Location: 1594631-1594870 bp Feature: gene Location: 3132458-3134356 bp Ori: ABF09754.1 Gene: vsrB Feature: domain Description: BaeS Location: 3132803-3133913 bp Feature: domain Description: BaeS Location: 31 32803-31 3391 3 bp Feature: domain Description: PRK15347 Location: 3134000-3134324 bp Feature: domain Description: PRK1 5347 Location: 31 34000-31 34324 bp Feature: gene Location: 3135081-3135440 bp Feature: gene Location: 3135681-3137381 bp Ori: ABF09756.1 Feature: domain Description: RVT_N Location: 3135738-3135978 bp Feature: domain Description: RVT_N Location: 31 35738-31 35978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3136026-3136674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 36026-31 36674 bp Feature: domain Description: GIIM Note: maturase Location: 3136731-3136959 bp Feature: domain Description: GIIM Note: maturase Location: 31 36731 -31 36959 bp Feature: domain Description: HNHc Note: nucleases Location: 3137184-3137343 bp Feature: domain Description: HNHc Note: nucleases Location: 31 371 84-31 37343 bp Feature: gene Location: 3137460-3138488 bp Ori: ABF09757.1 Gene: ribF Feature: domain Description: PRK05627 Location: 3137514-3138426 bp Feature: domain Description: PRK05627 Location: 31 3751 4-31 38426 bp Feature: gene Location: 3138608-3141487 bp Ori: ABF09758.1 Gene: ileS Feature: domain Description: ileS Location: 3138641-3141455 bp Feature: domain Description: ileS Location: 31 38641 -31 41 455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PspE (COG0607), GRX_bact (TIGR02181), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05751 (preprotein translocase subunit SecB; Validated), gpsA (PRK00094), KAP_NTPase (pfam07693), RVT-Retrons
HTH_XRE (smart00530), BaeS (COG0642), PRK15347 (two component system sensor kinase), PRK05627 (bifunctional riboflavin kinase/FAD synthetase), ileS (TIGR00392)