myRT

myRT report for GCA_000196155.1_ASM19615v1

Download annotations/find similar RTs

Seq: BX470251.1 Photorhabdus luminescens subsp. laumondii TTO1 complete genome (5688987 bp)
Overview 1 RT 1: 1201103-1203953 bp 2 RT 2: 1272392-1293606 bp 3 RT 3: 2836413-2842800 bp 4 RT 4: 5180019-5183027 bp 5 RT 5: 5646488-5649540 bp Neighborhood of RT #1 [1201103, 1204003] RVT-GII HTH_Tnp_1 Neighborhood of RT #2 [1272392, 1293626] DDE_Tnp_1_6 RVT-GII RVT-GII GIIM RVT-GII FMT_core_NRPS_like FMT_C_OzmH_like PRK12467 PRK12467 PRK12467 PRK12467 PP-binding PRK12316 Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 Neighborhood of RT #3 [2836413, 2843954] DDE_Tnp_Tn3 RVT-GII HTH_29 HTH_33 DDE_3 Peptidase_M91 Neighborhood of RT #4 [5180019, 5183027] DUF2235 DUF2235 RVT-GII RVT-GII Neighborhood of RT #5 [5646488, 5649540] arc_metj RVT-Retrons Feature: gene Location: 1201103-1201723 bp Feature: gene Location: 1201546-1202130 bp Feature: gene Location: 1202127-1202906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1202130-1202763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2021 30-1 202763 bp Feature: gene Location: 1203054-1203323 bp Feature: gene Location: 1203815-1204003 bp Ori: CAE13317.1 Feature: domain Description: HTH_Tnp_1 Location: 1203824-1203953 bp Feature: domain Description: HTH_Tnp_1 Location: 1 203824-1 203953 bp Feature: gene Location: 1272392-1273027 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1272602-1272953 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 272602-1 272953 bp Feature: gene Location: 1273483-1273752 bp Feature: gene Location: 1273899-1274372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1273902-1274346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 273902-1 274346 bp Feature: gene Location: 1274553-1274753 bp Feature: gene Location: 1274750-1276159 bp Ori: CAE13405.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1275104-1275761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2751 04-1 275761 bp Feature: domain Description: GIIM Note: maturase Location: 1275842-1276061 bp Feature: domain Description: GIIM Note: maturase Location: 1 275842-1 276061 bp Feature: gene Location: 1276114-1276716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1276228-1276414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 276228-1 27641 4 bp Feature: gene Location: 1277282-1292233 bp Feature: domain Description: FMT_core_NRPS_like Location: 1277396-1277891 bp Feature: domain Description: FMT_core_NRPS_like Location: 1 277396-1 277891 bp Feature: domain Description: FMT_C_OzmH_like Location: 1277969-1278263 bp Feature: domain Description: FMT_C_OzmH_like Location: 1 277969-1 278263 bp Feature: domain Description: PRK12467 Location: 1278884-1280456 bp Feature: domain Description: PRK1 2467 Location: 1 278884-1 280456 bp Feature: domain Description: PRK12467 Location: 1280462-1284005 bp Feature: domain Description: PRK1 2467 Location: 1 280462-1 284005 bp Feature: domain Description: PRK12467 Location: 1284056-1287233 bp Feature: domain Description: PRK1 2467 Location: 1 284056-1 287233 bp Feature: domain Description: PRK12467 Location: 1287269-1290248 bp Feature: domain Description: PRK1 2467 Location: 1 287269-1 290248 bp Feature: domain Description: PP-binding Location: 1290308-1290497 bp Feature: domain Description: PP-binding Location: 1 290308-1 290497 bp Feature: domain Description: PRK12316 Location: 1290518-1292159 bp Feature: domain Description: PRK1 231 6 Location: 1 29051 8-1 2921 59 bp Feature: gene Location: 1292244-1293626 bp Ori: CAE13408.1 Gene: ISPlu9H Feature: domain Description: Tnp_DNA_bind Location: 1292268-1292439 bp Feature: domain Description: Tnp_DNA_bind Location: 1 292268-1 292439 bp Feature: domain Description: DDE_Tnp_1 Location: 1292820-1293321 bp Feature: domain Description: DDE_Tnp_1 Location: 1 292820-1 293321 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 1293330-1293606 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 1 293330-1 293606 bp Feature: gene Location: 2836413-2836640 bp Feature: gene Location: 2836866-2837090 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2836875-2836992 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2836875-2836992 bp Feature: gene Location: 2837217-2837597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2837421-2837487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2837421 -2837487 bp Feature: gene Location: 2837743-2838768 bp Ori: CAE14791.1 Gene: ISPlu3S Feature: domain Description: HTH_29 Location: 2837827-2837995 bp Feature: domain Description: HTH_29 Location: 2837827-2837995 bp Feature: domain Description: HTH_33 Location: 2838031-2838193 bp Feature: domain Description: HTH_33 Location: 2838031 -28381 93 bp Feature: domain Description: DDE_3 Location: 2838235-2838664 bp Feature: domain Description: DDE_3 Location: 2838235-2838664 bp Feature: gene Location: 2839044-2843954 bp Ori: CAE14793.1 Feature: domain Description: Peptidase_M91 Location: 2842278-2842800 bp Feature: domain Description: Peptidase_M91 Location: 2842278-2842800 bp Feature: gene Location: 5180019-5181581 bp Ori: CAE16802.1 Feature: domain Description: DUF2235 Location: 5180094-5180541 bp Feature: domain Description: DUF2235 Location: 51 80094-51 80541 bp Feature: domain Description: DUF2235 Location: 5180592-5180889 bp Feature: domain Description: DUF2235 Location: 51 80592-51 80889 bp Feature: gene Location: 5181511-5181717 bp Feature: gene Location: 5181810-5182034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5181819-5182020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 81 81 9-51 82020 bp Feature: gene Location: 5181946-5182491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5182330-5182411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 82330-51 8241 1 bp Feature: gene Location: 5182504-5182668 bp Feature: gene Location: 5182695-5183027 bp Feature: gene Location: 5646488-5646682 bp Ori: CAE17246.1 Feature: domain Description: arc_metj Location: 5646548-5646659 bp Feature: domain Description: arc_metj Location: 5646548-5646659 bp Feature: gene Location: 5646933-5647121 bp Feature: gene Location: 5647171-5648352 bp Ori: CAE17248.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5647321-5647897 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5647321 -5647897 bp Feature: gene Location: 5648342-5648869 bp Feature: gene Location: 5649373-5649540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_Tnp_1 (pfam01527), DDE_Tnp_1_6 (pfam13751), GIIM (pfam08388), FMT_core_NRPS_like (cd08649), FMT_C_OzmH_like (cd08700), PRK12467 (peptide synthase; Provisional), PP-binding (pfam00550), PRK12316 (peptide synthase; Provisional), Tnp_DNA_bind (pfam14706)
DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281), DDE_Tnp_Tn3 (pfam01526), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), Peptidase_M91 (pfam14891), DUF2235 (pfam09994), arc_metj (LOAD_arc_metj), RVT-Retrons