myRT

myRT report for GCA_000196255.1_ASM19625v1

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Seq: CR354531.1 Photobacterium profundum SS9 (4085304 bp)
Overview 1 RT 1: 1854011-1863421 bp Neighborhood of RT #1 [1854011, 1863465] TniQ RVT-GII GIIM YhhI YhhI flhF RVT-GII GIIM Y1_Tnp LPLAT_ABO13168-like Feature: gene Location: 1854011-1855744 bp Ori: CAG20034.1 Feature: domain Description: TniQ Location: 1854053-1854434 bp Feature: domain Description: TniQ Location: 1 854053-1 854434 bp Feature: gene Location: 1856739-1857269 bp Feature: gene Location: 1857534-1858370 bp Ori: CAG20036.1 Gene: NE2098 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1857540-1858140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 857540-1 8581 40 bp Feature: domain Description: GIIM Note: maturase Location: 1858185-1858368 bp Feature: domain Description: GIIM Note: maturase Location: 1 8581 85-1 858368 bp Feature: gene Location: 1858530-1859297 bp Ori: CAG20037.1 Gene: Z0275 Feature: domain Description: YhhI Location: 1858566-1858896 bp Feature: domain Description: YhhI Location: 1 858566-1 858896 bp Feature: domain Description: YhhI Location: 1858956-1859238 bp Feature: domain Description: YhhI Location: 1 858956-1 859238 bp Feature: gene Location: 1859285-1860481 bp Ori: CAG20038.1 Gene: RB787 Feature: domain Description: flhF Location: 1859318-1860413 bp Feature: domain Description: flhF Location: 1 85931 8-1 86041 3 bp Feature: gene Location: 1860777-1861064 bp Feature: gene Location: 1861197-1861826 bp Ori: CAG20040.1 Gene: NE2098 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1861200-1861434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 861 200-1 861 434 bp Feature: domain Description: GIIM Note: maturase Location: 1861479-1861680 bp Feature: domain Description: GIIM Note: maturase Location: 1 861 479-1 861 680 bp Feature: gene Location: 1862317-1862664 bp Ori: CAG20041.1 Gene: VC0870 Feature: domain Description: Y1_Tnp Location: 1862323-1862620 bp Feature: domain Description: Y1 _Tnp Location: 1 862323-1 862620 bp Feature: gene Location: 1862896-1863465 bp Ori: CAG20042.1 Gene: PG1355 Feature: domain Description: LPLAT_ABO13168-like Location: 1862917-1863421 bp Feature: domain Description: LPLAT_ABO1 31 68-like Location: 1 86291 7-1 863421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TniQ (pfam06527), RVT-GII, GIIM (pfam08388), YhhI (COG5433), flhF (PRK14723), Y1_Tnp (pfam01797), LPLAT_ABO13168-like (cd07988)

Seq: CR354532.1 Photobacterium profundum SS9 chromosome 2 (2237943 bp)
Overview 1 RT 1: 336127-340067 bp 2 RT 2: 647149-654377 bp 3 RT 3: 928690-932900 bp 4 RT 4: 936521-941434 bp 5 RT 5: 1547113-1551406 bp Neighborhood of RT #1 [336127, 340153] COG2929 Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 RVT-GII RVT-GII DDE_Tnp_IS66 COG3436 Neighborhood of RT #2 [647149, 654517] HTH_XRE RVT-Retrons RecT PRK09709 Neighborhood of RT #3 [928690, 932995] RVT-GII RVT-GII GIIM PcbC PcbC ATZ_TRZ_like Neighborhood of RT #4 [936521, 941505] RVT-GII GIIM NodN Beta-lactamase Neighborhood of RT #5 [1547113, 1551406] DDE_Tnp_IS1595 RVT-GII GIIM Feature: gene Location: 336127-336423 bp Ori: CAG22169.1 Gene: STY4886 Feature: domain Description: COG2929 Location: 336142-336409 bp Feature: domain Description: COG2 92 9 Location: 336142 -336409 bp Feature: gene Location: 336676-338064 bp Ori: CAG22170.1 Gene: ISPLU9A Feature: domain Description: Tnp_DNA_bind Location: 336700-336871 bp Feature: domain Description: Tnp_DNA_bind Location: 336700-336871 bp Feature: domain Description: DDE_Tnp_1 Location: 337183-337750 bp Feature: domain Description: DDE_Tnp_1 Location: 337183-337750 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 337762-338029 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 337762 -33802 9 bp Feature: gene Location: 338113-338424 bp Ori: CAG22171.1 Gene: ID266 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338161-338419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338161-338419 bp Feature: gene Location: 338530-339048 bp Ori: CAG22172.1 Gene: BLR1839 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338536-338671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338536-338671 bp Feature: gene Location: 339096-339554 bp Ori: CAG22173.1 Gene: PSPTO554 Feature: domain Description: DDE_Tnp_IS66 Location: 339105-339540 bp Feature: domain Description: DDE_Tnp_IS66 Location: 339105-339540 bp Feature: gene Location: 339551-340153 bp Ori: CAG22174.1 Gene: PP4025 Feature: domain Description: COG3436 Location: 339575-340067 bp Feature: domain Description: COG3436 Location: 339575-340067 bp Feature: gene Location: 647149-647403 bp Feature: gene Location: 648040-648384 bp Ori: CAG22430.1 Gene: TM1330 Feature: domain Description: HTH_XRE Location: 648091-648256 bp Feature: domain Description: HTH_XRE Location: 648091-6482 56 bp Feature: gene Location: 648365-649321 bp Ori: CAG22431.1 Gene: ALL2961 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 648554-649082 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 648554-649082 bp Feature: gene Location: 650013-651059 bp Ori: CAG22432.1 Gene: STY2074 Feature: domain Description: RecT Location: 650136-650721 bp Feature: domain Description: RecT Location: 650136-65072 1 bp Feature: gene Location: 651071-654517 bp Ori: CAG22433.1 Feature: domain Description: PRK09709 Location: 653081-654377 bp Feature: domain Description: PRK09709 Location: 653081-654377 bp Feature: gene Location: 928690-928992 bp Feature: gene Location: 929232-929582 bp Feature: gene Location: 929824-930198 bp Ori: CAG22670.1 Gene: BH0533 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930037-930154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930037-930154 bp Feature: gene Location: 930315-931082 bp Ori: CAG22671.1 Gene: PSPTO332 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930321-930657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93032 1-930657 bp Feature: domain Description: GIIM Note: maturase Location: 930705-930927 bp Feature: domain Description: GIIM Note: maturase Location: 930705-93092 7 bp Feature: gene Location: 931436-932275 bp Ori: CAG22672.1 Gene: CV0045 Feature: domain Description: PcbC Location: 931490-931700 bp Feature: domain Description: PcbC Location: 931490-931700 bp Feature: domain Description: PcbC Location: 931733-932207 bp Feature: domain Description: PcbC Location: 931733-932 2 07 bp Feature: gene Location: 932372-932995 bp Ori: CAG22673.1 Gene: SSNA Feature: domain Description: ATZ_TRZ_like Location: 932375-932900 bp Feature: domain Description: ATZ_TRZ_like Location: 932 375-932 900 bp Feature: gene Location: 936521-936778 bp Feature: gene Location: 936961-937224 bp Feature: gene Location: 937334-938599 bp Ori: CAG22679.1 Gene: PP3868 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 937547-938165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 937547-938165 bp Feature: domain Description: GIIM Note: maturase Location: 938213-938435 bp Feature: domain Description: GIIM Note: maturase Location: 9382 13-938435 bp Feature: gene Location: 938719-939396 bp Ori: CAG22680.1 Gene: MT0138 Feature: domain Description: NodN Location: 938953-939394 bp Feature: domain Description: NodN Location: 938953-939394 bp Feature: gene Location: 940234-941505 bp Ori: CAG22681.1 Feature: domain Description: Beta-lactamase Location: 940486-941434 bp Feature: domain Description: Beta-lactamase Location: 940486-941434 bp Feature: gene Location: 1547113-1547442 bp Feature: gene Location: 1548548-1549294 bp Ori: CAG23258.1 Feature: domain Description: DDE_Tnp_IS1595 Location: 1548800-1549217 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 1548800-15492 17 bp Feature: gene Location: 1549490-1550395 bp Ori: CAG23259.1 Gene: NE2098 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1549493-1549958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1549493-1549958 bp Feature: domain Description: GIIM Note: maturase Location: 1550003-1550204 bp Feature: domain Description: GIIM Note: maturase Location: 1550003-15502 04 bp Feature: gene Location: 1550470-1550850 bp Feature: gene Location: 1550981-1551406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2929 (Uncharacterized conserved protein, DUF497 family ), Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281), RVT-GII, DDE_Tnp_IS66 (pfam03050), COG3436 (Transposase ), HTH_XRE (smart00530), RVT-Retrons, RecT (pfam03837)
PRK09709 (exodeoxyribonuclease VIII), GIIM (pfam08388), PcbC (COG3491), ATZ_TRZ_like (cd01298), NodN (cd03450), Beta-lactamase (pfam00144), DDE_Tnp_IS1595 (pfam12762)