myRT

myRT report for GCA_000198775.1_ASM19877v1

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Seq: FR687360.1 Burkholderia rhizoxinica HKI 454 plasmid pBRH01, complete sequence (822304 bp)
Overview 1 RT 1: 353562-359149 bp Neighborhood of RT #1 [353562, 359172] IS5 RVT_N RVT-GII GIIM DUF772 RVT-GII DUF772 Feature: gene Location: 353562-353690 bp Feature: gene Location: 353733-354407 bp Ori: CBW76773.1 Feature: domain Description: IS5 Location: 353907-354381 bp Feature: domain Description: IS5 Location: 353907-354381 bp Feature: gene Location: 354346-355818 bp Ori: CBW76774.1 Feature: domain Description: RVT_N Location: 354418-354661 bp Feature: domain Description: RVT_N Location: 35441 8-354661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354706-355348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354706-355348 bp Feature: domain Description: GIIM Note: maturase Location: 355399-355633 bp Feature: domain Description: GIIM Note: maturase Location: 355399-355633 bp Feature: gene Location: 356147-357112 bp Ori: CBW76775.1 Feature: domain Description: DUF772 Location: 356273-356378 bp Feature: domain Description: DUF772 Location: 356273-356378 bp Feature: gene Location: 357033-358547 bp Ori: CBW76776.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357444-358134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357444-3581 34 bp Feature: gene Location: 358606-358881 bp Feature: gene Location: 358882-359172 bp Ori: CBW76778.1 Feature: domain Description: DUF772 Location: 359038-359149 bp Feature: domain Description: DUF772 Location: 359038-3591 49 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: FR687359.1 Burkholderia rhizoxinica HKI 454, complete genome (2755309 bp)
Overview 1 RT 1: 2487322-2492783 bp 2 RT 2: 2719128-2725370 bp Neighborhood of RT #1 [2487322, 2492824] Aes PRK13929 RVT-GII GIIM PRK06958 MFS_YajR_like Neighborhood of RT #2 [2719128, 2725384] IS5 RVT_N RVT-GII GIIM DUF772 AtoC AtoC Feature: gene Location: 2487322-2488236 bp Ori: CBW76104.1 Feature: domain Description: Aes Location: 2487490-2488222 bp Feature: domain Description: Aes Location: 2 487490-2 4882 2 2 bp Feature: gene Location: 2488388-2488855 bp Ori: CBW76105.1 Feature: domain Description: PRK13929 Location: 2488652-2488826 bp Feature: domain Description: PRK1392 9 Location: 2 488652 -2 48882 6 bp Feature: gene Location: 2488964-2490358 bp Ori: CBW76106.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2489294-2489912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4892 94-2 489912 bp Feature: domain Description: GIIM Note: maturase Location: 2489960-2490188 bp Feature: domain Description: GIIM Note: maturase Location: 2 489960-2 490188 bp Feature: gene Location: 2490833-2491375 bp Ori: CBW76107.1 Feature: domain Description: PRK06958 Location: 2490836-2491373 bp Feature: domain Description: PRK06958 Location: 2 490836-2 491373 bp Feature: gene Location: 2491430-2492824 bp Ori: CBW76108.1 Feature: domain Description: MFS_YajR_like Location: 2491685-2492783 bp Feature: domain Description: MFS_YajR_like Location: 2 491685-2 492 783 bp Feature: gene Location: 2719128-2719229 bp Feature: gene Location: 2719551-2720225 bp Ori: CBW76370.1 Feature: domain Description: IS5 Location: 2719725-2720193 bp Feature: domain Description: IS5 Location: 2 71972 5-2 72 0193 bp Feature: gene Location: 2720164-2721636 bp Ori: CBW76371.1 Feature: domain Description: RVT_N Location: 2720236-2720479 bp Feature: domain Description: RVT_N Location: 2 72 02 36-2 72 0479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2720524-2721166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 72 052 4-2 72 1166 bp Feature: domain Description: GIIM Note: maturase Location: 2721217-2721451 bp Feature: domain Description: GIIM Note: maturase Location: 2 72 12 17-2 72 1451 bp Feature: gene Location: 2721965-2723077 bp Ori: CBW76372.1 Feature: domain Description: DUF772 Location: 2722121-2722343 bp Feature: domain Description: DUF772 Location: 2 72 2 12 1-2 72 2 343 bp Feature: gene Location: 2724698-2725384 bp Ori: CBW76373.1 Feature: domain Description: AtoC Location: 2724701-2725070 bp Feature: domain Description: AtoC Location: 2 72 4701-2 72 5070 bp Feature: domain Description: AtoC Location: 2725208-2725370 bp Feature: domain Description: AtoC Location: 2 72 52 08-2 72 5370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Aes (COG0657), PRK13929 (rod-share determining protein MreBH; Provisional), RVT-GII, GIIM (pfam08388), PRK06958 (single-stranded DNA-binding protein; Provisional), MFS_YajR_like (cd17472), IS5 (COG3039), RVT_N (pfam13655), DUF772 (pfam05598), AtoC (COG2204)

Seq: FR687361.1 Burkholderia rhizoxinica HKI 454 plasmid pBRH02, complete sequence (172525 bp)
Overview 1 RT 1: 16162-19350 bp 2 RT 2: 150472-158255 bp Neighborhood of RT #1 [16162, 19352] InsE PHA02517 RVT-GII PHA02517 Neighborhood of RT #2 [150472, 158281] COG3547 DUF772 RVT_N RVT-GII PRK09183 COG4584 RVT-GII GIIM IS5 2HCT Feature: gene Location: 16162-16488 bp Ori: CBW77237.1 Feature: domain Description: InsE Location: 16168-16477 bp Feature: domain Description: InsE Location: 16168-16477 bp Feature: gene Location: 16545-17042 bp Ori: CBW77238.1 Feature: domain Description: PHA02517 Location: 16548-16908 bp Feature: domain Description: PHA02517 Location: 16548-16908 bp Feature: gene Location: 17564-18571 bp Ori: CBW77239.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17837-18500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1783 7-18500 bp Feature: gene Location: 18571-18804 bp Feature: gene Location: 18921-19352 bp Ori: CBW77241.1 Feature: domain Description: PHA02517 Location: 18924-19350 bp Feature: domain Description: PHA02517 Location: 18924-193 50 bp Feature: gene Location: 150472-150909 bp Ori: CBW77409.1 Feature: domain Description: COG3547 Location: 150487-150847 bp Feature: domain Description: COG3 547 Location: 150487-150847 bp Feature: gene Location: 151141-152253 bp Ori: CBW77410.1 Feature: domain Description: DUF772 Location: 151297-151519 bp Feature: domain Description: DUF772 Location: 151297-151519 bp Feature: gene Location: 152582-153013 bp Ori: CBW77411.1 Feature: domain Description: RVT_N Location: 152654-152897 bp Feature: domain Description: RVT_N Location: 152654-152897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152942-153005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152942-153 005 bp Feature: gene Location: 153064-153519 bp Ori: CBW77412.1 Feature: domain Description: PRK09183 Location: 153196-153502 bp Feature: domain Description: PRK09183 Location: 153 196-153 502 bp Feature: gene Location: 153835-154911 bp Ori: CBW77413.1 Feature: domain Description: COG4584 Location: 153886-154744 bp Feature: domain Description: COG4584 Location: 153 886-154744 bp Feature: gene Location: 154919-156016 bp Ori: CBW77414.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154952-155546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154952-155546 bp Feature: domain Description: GIIM Note: maturase Location: 155597-155831 bp Feature: domain Description: GIIM Note: maturase Location: 155597-15583 1 bp Feature: gene Location: 156170-156631 bp Ori: CBW77415.1 Feature: domain Description: IS5 Location: 156176-156599 bp Feature: domain Description: IS5 Location: 156176-156599 bp Feature: gene Location: 157349-158281 bp Ori: CBW77416.1 Feature: domain Description: 2HCT Location: 157355-158255 bp Feature: domain Description: 2HCT Location: 1573 55-158255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, COG3547 (Transposase ), DUF772 (pfam05598), RVT_N (pfam13655), PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase ), GIIM (pfam08388), IS5 (COG3039)
2HCT (pfam03390)