myRT

myRT report for GCA_000204985.1_ASM20498v1

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Seq: CP002464.1 Lactobacillus johnsonii DPC 6026, complete genome (1966342 bp)
Overview 1 RT 1: 133470-140042 bp 2 RT 2: 511545-517574 bp 3 RT 3: 1642339-1649883 bp 4 RT 4: 1756763-1761011 bp 5 RT 5: 1812916-1817102 bp Neighborhood of RT #1 [133470, 140056] ddl HTH_HspR RVT-GII GIIM NhaP COG5438 Neighborhood of RT #2 [511545, 517615] PRK00409 thioredoxin RVT-GII GIIM DUF2507 PRK00865 Neighborhood of RT #3 [1642339, 1649891] YurZ RVT-GII GIIM PRK13805 AnsP Neighborhood of RT #4 [1756763, 1761034] nrdI nrdF RVT-GII GIIM PemK_toxin Neighborhood of RT #5 [1812916, 1817102] SsuE SsuE RVT-GII GIIM AcrR Feature: gene Location: 133470-134555 bp Ori: AEB92453.1 Feature: domain Description: ddl Location: 133479-134514 bp Feature: domain Description: ddl Location: 1 33479-1 3451 4 bp Feature: gene Location: 134585-135301 bp Ori: AEB92454.1 Feature: domain Description: HTH_HspR Location: 134639-134891 bp Feature: domain Description: HTH_HspR Location: 1 34639-1 34891 bp Feature: gene Location: 135898-137193 bp Ori: AEB92455.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136099-136717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36099-1 3671 7 bp Feature: domain Description: GIIM Note: maturase Location: 136771-136981 bp Feature: domain Description: GIIM Note: maturase Location: 1 36771 -1 36981 bp Feature: gene Location: 137274-138845 bp Ori: AEB92456.1 Feature: domain Description: NhaP Location: 137286-138501 bp Feature: domain Description: NhaP Location: 1 37286-1 38501 bp Feature: gene Location: 138950-140056 bp Ori: AEB92457.1 Feature: domain Description: COG5438 Location: 138974-140042 bp Feature: domain Description: COG5438 Location: 1 38974-1 40042 bp Feature: gene Location: 511545-513911 bp Ori: AEB92799.1 Feature: domain Description: PRK00409 Location: 511548-513906 bp Feature: domain Description: PRK00409 Location: 51 1 548-51 3906 bp Feature: gene Location: 513990-514301 bp Ori: AEB92800.1 Feature: domain Description: thioredoxin Location: 514008-514290 bp Feature: domain Description: thioredoxin Location: 51 4008-51 4290 bp Feature: gene Location: 514915-516210 bp Ori: AEB92801.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 515116-515734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 51 1 6-51 5734 bp Feature: domain Description: GIIM Note: maturase Location: 515788-515998 bp Feature: domain Description: GIIM Note: maturase Location: 51 5788-51 5998 bp Feature: gene Location: 516323-516718 bp Ori: AEB92802.1 Feature: domain Description: DUF2507 Location: 516350-516710 bp Feature: domain Description: DUF2507 Location: 51 6350-51 671 0 bp Feature: gene Location: 516815-517615 bp Ori: AEB92803.1 Feature: domain Description: PRK00865 Location: 516821-517574 bp Feature: domain Description: PRK00865 Location: 51 6821 -51 7574 bp Feature: gene Location: 1642339-1642956 bp Ori: AEB93841.1 Feature: domain Description: YurZ Location: 1642546-1642771 bp Feature: domain Description: YurZ Location: 1 642546-1 642771 bp Feature: gene Location: 1643038-1643463 bp Feature: gene Location: 1643660-1644955 bp Ori: AEB93843.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1643861-1644479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 643861 -1 644479 bp Feature: domain Description: GIIM Note: maturase Location: 1644533-1644743 bp Feature: domain Description: GIIM Note: maturase Location: 1 644533-1 644743 bp Feature: gene Location: 1645594-1648203 bp Ori: AEB93844.1 Feature: domain Description: PRK13805 Location: 1645621-1648180 bp Feature: domain Description: PRK1 3805 Location: 1 645621 -1 6481 80 bp Feature: gene Location: 1648518-1649891 bp Ori: AEB93845.1 Feature: domain Description: AnsP Location: 1648542-1649883 bp Feature: domain Description: AnsP Location: 1 648542-1 649883 bp Feature: gene Location: 1756763-1757224 bp Ori: AEB93928.1 Feature: domain Description: nrdI Location: 1756766-1757138 bp Feature: domain Description: nrdI Location: 1 756766-1 7571 38 bp Feature: gene Location: 1757217-1758158 bp Ori: AEB93929.1 Feature: domain Description: nrdF Location: 1757223-1758108 bp Feature: domain Description: nrdF Location: 1 757223-1 7581 08 bp Feature: gene Location: 1758234-1759529 bp Ori: AEB93930.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1758435-1759053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 758435-1 759053 bp Feature: domain Description: GIIM Note: maturase Location: 1759107-1759317 bp Feature: domain Description: GIIM Note: maturase Location: 1 7591 07-1 75931 7 bp Feature: gene Location: 1760122-1760607 bp Feature: gene Location: 1760693-1761034 bp Ori: AEB93932.1 Feature: domain Description: PemK_toxin Location: 1760714-1761011 bp Feature: domain Description: PemK_toxin Location: 1 76071 4-1 761 01 1 bp Feature: gene Location: 1812916-1813470 bp Ori: AEB93975.1 Feature: domain Description: SsuE Location: 1812919-1813462 bp Feature: domain Description: SsuE Location: 1 81 291 9-1 81 3462 bp Feature: gene Location: 1813483-1814019 bp Ori: AEB93976.1 Feature: domain Description: SsuE Location: 1813486-1814002 bp Feature: domain Description: SsuE Location: 1 81 3486-1 81 4002 bp Feature: gene Location: 1814188-1815483 bp Ori: AEB93977.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1814389-1815007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 4389-1 81 5007 bp Feature: domain Description: GIIM Note: maturase Location: 1815061-1815271 bp Feature: domain Description: GIIM Note: maturase Location: 1 81 5061 -1 81 5271 bp Feature: gene Location: 1816092-1816715 bp Ori: AEB93978.1 Feature: domain Description: AcrR Location: 1816110-1816455 bp Feature: domain Description: AcrR Location: 1 81 61 1 0-1 81 6455 bp Feature: gene Location: 1816860-1817102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ddl (PRK01966), HTH_HspR (cd04766), RVT-GII, GIIM (pfam08388), NhaP (COG0025), COG5438 (Uncharacterized membrane protein ), PRK00409 (recombination and DNA strand exchange inhibitor protein; Reviewed), thioredoxin (TIGR01068), DUF2507 (pfam10702), PRK00865 (glutamate racemase; Provisional)
YurZ (COG0599), PRK13805 (bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional), AnsP (COG1113), nrdI (TIGR00333), nrdF (PRK09614), PemK_toxin (pfam02452), SsuE (COG0431), AcrR (COG1309)