myRT

myRT report for GCA_000210835.1_ASM21083v1

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Seq: FQ312004.1 Bacteroides fragilis 638R genome (5373121 bp)
Overview 1 RT 1: 1245468-1254426 bp 2 RT 2: 1426470-1429874 bp 3 RT 3: 1618366-1624655 bp 4 RT 4: 2438525-2441693 bp 5 RT 5: 2452880-2458742 bp 6 RT 6: 4840807-4845815 bp Neighborhood of RT #1 [1245468, 1254434] GlnA3 RVT-Retrons rpsA RNase_Z Neighborhood of RT #2 [1426470, 1429942] HTH_17 RVT-Retrons COG3943 Neighborhood of RT #3 [1618366, 1624705] DUF4141 DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Neighborhood of RT #4 [2438525, 2441693] Avd_like RVT-DGRs Neighborhood of RT #5 [2452880, 2459203] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF3876 DUF4141 Neighborhood of RT #6 [4840807, 4845815] NHL 7WD40 RVT_N RVT-GII HTH_28 Feature: gene Location: 1245468-1247657 bp Ori: CBW21584.1 Gene: glnA Feature: domain Description: GlnA3 Location: 1245543-1247655 bp Feature: domain Description: GlnA3 Location: 1 245543-1 247655 bp Feature: gene Location: 1247897-1250116 bp Feature: gene Location: 1250323-1251435 bp Ori: CBW21586.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1250638-1251187 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 250638-1 251 1 87 bp Feature: gene Location: 1251577-1253370 bp Ori: CBW21587.1 Gene: rpsA Feature: domain Description: rpsA Location: 1251655-1253263 bp Feature: domain Description: rpsA Location: 1 251 655-1 253263 bp Feature: gene Location: 1253520-1254434 bp Ori: CBW21588.1 Feature: domain Description: RNase_Z Location: 1253535-1254426 bp Feature: domain Description: RNase_Z Location: 1 253535-1 254426 bp Feature: gene Location: 1426470-1426835 bp Ori: CBW21729.1 Feature: domain Description: HTH_17 Location: 1426605-1426743 bp Feature: domain Description: HTH_1 7 Location: 1 426605-1 426743 bp Feature: gene Location: 1427295-1427516 bp Feature: gene Location: 1427542-1428399 bp Ori: CBW21731.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1427704-1428229 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 427704-1 428229 bp Feature: gene Location: 1428430-1429311 bp Feature: gene Location: 1429577-1429942 bp Ori: CBW21733.1 Feature: domain Description: COG3943 Location: 1429616-1429874 bp Feature: domain Description: COG3943 Location: 1 42961 6-1 429874 bp Feature: gene Location: 1618366-1618992 bp Ori: CBW21900.1 Gene: traI Feature: domain Description: DUF4141 Location: 1618378-1618531 bp Feature: domain Description: DUF41 41 Location: 1 61 8378-1 61 8531 bp Feature: gene Location: 1618992-1619342 bp Ori: CBW21901.1 Gene: traH Feature: domain Description: DUF3876 Location: 1619049-1619316 bp Feature: domain Description: DUF3876 Location: 1 61 9049-1 61 931 6 bp Feature: gene Location: 1619585-1621408 bp Ori: CBW21902.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1619849-1620671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 9849-1 620671 bp Feature: domain Description: Intron_maturas2 Location: 1620845-1621088 bp Feature: domain Description: Intron_maturas2 Location: 1 620845-1 621 088 bp Feature: domain Description: HNHc Note: nucleases Location: 1621199-1621370 bp Feature: domain Description: HNHc Note: nucleases Location: 1 621 1 99-1 621 370 bp Feature: gene Location: 1621977-1624373 bp Ori: CBW21903.1 Feature: domain Description: Bac_Flav_CT_G Location: 1621980-1624365 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 621 980-1 624365 bp Feature: gene Location: 1624370-1624705 bp Ori: CBW21904.1 Gene: traF Feature: domain Description: DUF4133 Location: 1624388-1624655 bp Feature: domain Description: DUF41 33 Location: 1 624388-1 624655 bp Feature: gene Location: 2438525-2438758 bp Ori: CBW22592.1 Feature: domain Description: Avd_like Location: 2438534-2438717 bp Feature: domain Description: Avd_like Location: 2438534-243871 7 bp Feature: gene Location: 2439054-2439275 bp Feature: gene Location: 2439521-2440570 bp Ori: CBW22594.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2439524-2440193 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2439524-24401 93 bp Feature: gene Location: 2440767-2440973 bp Feature: gene Location: 2441115-2441693 bp Feature: gene Location: 2452880-2453215 bp Ori: CBW22612.1 Feature: domain Description: DUF4133 Location: 2452898-2453159 bp Feature: domain Description: DUF41 33 Location: 2452898-24531 59 bp Feature: gene Location: 2453200-2455593 bp Ori: CBW22613.1 Feature: domain Description: Bac_Flav_CT_G Location: 2453203-2455585 bp Feature: domain Description: Bac_Flav_CT_G Location: 2453203-2455585 bp Feature: gene Location: 2456162-2457985 bp Ori: CBW22614.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2456426-2457248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2456426-2457248 bp Feature: domain Description: Intron_maturas2 Location: 2457422-2457665 bp Feature: domain Description: Intron_maturas2 Location: 2457422-2457665 bp Feature: domain Description: HNHc Note: nucleases Location: 2457776-2457947 bp Feature: domain Description: HNHc Note: nucleases Location: 2457776-2457947 bp Feature: gene Location: 2458224-2458496 bp Ori: CBW22615.1 Feature: domain Description: DUF3876 Location: 2458251-2458482 bp Feature: domain Description: DUF3876 Location: 2458251 -2458482 bp Feature: gene Location: 2458574-2459203 bp Ori: CBW22616.1 Feature: domain Description: DUF4141 Location: 2458583-2458742 bp Feature: domain Description: DUF41 41 Location: 2458583-2458742 bp Feature: gene Location: 4840807-4842174 bp Feature: gene Location: 4842171-4843226 bp Ori: CBW24548.1 Feature: domain Description: NHL Location: 4842393-4842759 bp Feature: domain Description: NHL Location: 4842393-4842759 bp Feature: domain Description: 7WD40 Location: 4842810-4843191 bp Feature: domain Description: 7WD40 Location: 484281 0-48431 91 bp Feature: gene Location: 4843974-4844426 bp Feature: domain Description: RVT_N Location: 4844046-4844277 bp Feature: domain Description: RVT_N Location: 4844046-4844277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4844331-4844400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4844331 -4844400 bp Feature: gene Location: 4844692-4845012 bp Ori: CBW24550.1 Feature: domain Description: HTH_28 Location: 4844746-4844893 bp Feature: domain Description: HTH_28 Location: 4844746-4844893 bp Feature: gene Location: 4845441-4845815 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651), HTH_17 (pfam12728), COG3943 (Uncharacterized conserved protein ), DUF4141 (pfam13605), DUF3876 (pfam12992), RVT-GII, Intron_maturas2 (pfam01348)
HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), DUF4133 (pfam13571), Avd_like (cd16376), RVT-DGRs, NHL (pfam01436), 7WD40 (sd00039), RVT_N (pfam13655), HTH_28 (pfam13518)