myRT

myRT report for GCA_000212715.2_ASM21271v2

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Seq: CP002732.1 Escherichia coli UMNK88 plasmid pUMNK88_Ent, complete sequence (81475 bp)
Overview 1 RT 1: 71198-75944 bp Neighborhood of RT #1 [71198, 75952] DUF1380 PRK13699 RVT_N RVT-GII GIIM HNHc DUF4113 Feature: gene Location: 71198-71632 bp Ori: AEE60030.1 Feature: domain Description: DUF1380 Location: 71201-71606 bp Feature: domain Description: DUF1 380 Location: 71 201 -71 606 bp Feature: gene Location: 71868-72521 bp Ori: AEE60031.1 Feature: domain Description: PRK13699 Location: 71913-72519 bp Feature: domain Description: PRK1 3699 Location: 71 91 3-7251 9 bp Feature: gene Location: 73101-74801 bp Ori: AEE60032.1 Feature: domain Description: RVT_N Location: 73155-73398 bp Feature: domain Description: RVT_N Location: 731 55-73398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73443-74079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73443-74079 bp Feature: domain Description: GIIM Note: maturase Location: 74130-74364 bp Feature: domain Description: GIIM Note: maturase Location: 741 30-74364 bp Feature: domain Description: HNHc Note: nucleases Location: 74595-74745 bp Feature: domain Description: HNHc Note: nucleases Location: 74595-74745 bp Feature: gene Location: 75031-75342 bp Feature: gene Location: 75452-75952 bp Ori: AEE60034.1 Feature: domain Description: DUF4113 Location: 75863-75944 bp Feature: domain Description: DUF41 1 3 Location: 75863-75944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF4113 (pfam13438)

Seq: CP002730.1 Escherichia coli UMNK88 plasmid pUMNK88_K88, complete sequence (81883 bp)
Overview 1 RT 1: 12498-15986 bp 2 RT 2: 26016-29981 bp Neighborhood of RT #1 [12498, 15994] PHA02517 RVT-GII GIIM DDE_Tnp_1 InsG Neighborhood of RT #2 [26016, 29981] HTH_23 InsE TnpB_IS66 RVT_N RVT-GII InsE Feature: gene Location: 12498-12761 bp Feature: gene Location: 12819-13265 bp Ori: AEE59800.1 Feature: domain Description: PHA02517 Location: 12822-13263 bp Feature: domain Description: PHA02 517 Location: 12 82 2 -132 63 bp Feature: gene Location: 13382-14740 bp Ori: AEE59801.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13490-14222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13490-142 2 2 bp Feature: domain Description: GIIM Note: maturase Location: 14297-14495 bp Feature: domain Description: GIIM Note: maturase Location: 142 97-14495 bp Feature: gene Location: 14938-15366 bp Ori: AEE59802.1 Feature: domain Description: DDE_Tnp_1 Location: 15055-15298 bp Feature: domain Description: DDE_Tnp_1 Location: 15055-152 98 bp Feature: gene Location: 15386-15994 bp Ori: AEE59803.1 Feature: domain Description: InsG Location: 15395-15986 bp Feature: domain Description: InsG Location: 15395-15986 bp Feature: gene Location: 26016-26663 bp Ori: AEE59812.1 Feature: domain Description: HTH_23 Location: 26067-26166 bp Feature: domain Description: HTH_2 3 Location: 2 6067-2 6166 bp Feature: domain Description: InsE Location: 26295-26511 bp Feature: domain Description: InsE Location: 2 62 95-2 6511 bp Feature: gene Location: 26663-26974 bp Ori: AEE59813.1 Feature: domain Description: TnpB_IS66 Location: 26690-26969 bp Feature: domain Description: TnpB_IS66 Location: 2 6690-2 6969 bp Feature: gene Location: 27572-28495 bp Ori: AEE59814.1 Feature: domain Description: RVT_N Location: 27620-27863 bp Feature: domain Description: RVT_N Location: 2 762 0-2 7863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27908-28478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7908-2 8478 bp Feature: gene Location: 28828-29247 bp Ori: AEE59815.1 Feature: domain Description: InsE Location: 28843-29227 bp Feature: domain Description: InsE Location: 2 8843-2 92 2 7 bp Feature: gene Location: 29259-29981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_1 (pfam01609), InsG (COG3385), HTH_23 (pfam13384), InsE (COG2963), TnpB_IS66 (pfam05717), RVT_N (pfam13655)